Gene annotation
Transcriptome id Sobic.003G018600.1
Synonym Sb03g001950
Functional annotation LSM domain containing protein, expressed
UniProt C5XL26
Pfam PF01423
Panther DB PTHR11193
NCBI CDD KOG1774; Small nuclear ribonucleoprotein E
KEGG Orthology K11097; SNRPE, small nuclear ribonucleoprotein E
Gene Ontology GO:0005681; spliceosomal complex GO:0000398mRNA splicing, via spliceosome


Orthologs (automatic annotation)
TAIR AT2G18740 : Small nuclear ribonucleoprotein family protein
RAP-DB (Rice) LOC_Os08g05530.1 : LSM domain containing protein, expressed
MaizeGDB (Corn) Zm00025a035895
Brachypodium KQJ95428 , KQJ93077
Barley HORVU7Hr1G072420.2 , HORVU7Hr1G072420.3 , HORVU7Hr1G072420.1 , HORVU7Hr1G072420.4
Wheat TraesCS6A02G089100 , TraesCS6A02G089100 , TraesCSU02G017200 , TraesCS7D02G299900 , TraesCS7B02G204700 , TraesCS7A02G304400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
2 Sobic.006G115000 LSM domain containing protein, expressed K11087: SNRPD1, small nuclear ribonucleoprotein D1
3 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
4 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
5 Sobic.005G110800 - -
6 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
7 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
8 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
9 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
10 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
11 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
12 Sobic.001G014500 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed K03016: RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3
13 Sobic.001G018800 60S ribosomal protein L44, putative, expressed K02929: RP-L44e, large subunit ribosomal protein L44e
14 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
15 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
16 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
17 Sobic.001G537200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
18 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
19 Sobic.010G060500 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
20 Sobic.001G340500 LSM domain containing protein, expressed K11099: SNRPG, small nuclear ribonucleoprotein G


Gene co-expression network
sample Sobic003G018600 Sobic003G018600 Sobic002G286900 Sobic002G286900 Sobic003G018600--Sobic002G286900 Sobic006G115000 Sobic006G115000 Sobic003G018600--Sobic006G115000 Sobic009G166500 Sobic009G166500 Sobic003G018600--Sobic009G166500 Sobic001G377800 Sobic001G377800 Sobic003G018600--Sobic001G377800 Sobic005G110800 Sobic005G110800 Sobic003G018600--Sobic005G110800 Sobic009G050300 Sobic009G050300 Sobic003G018600--Sobic009G050300 Sobic006G137100 Sobic006G137100 Sobic003G018600--Sobic006G137100 Sobic009G163800 Sobic009G163800 Sobic003G018600--Sobic009G163800 Sobic003G249700 Sobic003G249700 Sobic003G018600--Sobic003G249700 Sobic002G286900--Sobic006G137100 Sobic008G108601 Sobic008G108601 Sobic002G286900--Sobic008G108601 Sobic004G008400 Sobic004G008400 Sobic002G286900--Sobic004G008400 Sobic002G286900--Sobic009G050300 Sobic001G226500 Sobic001G226500 Sobic002G286900--Sobic001G226500 Sobic001G403500 Sobic001G403500 Sobic002G286900--Sobic001G403500 Sobic002G286900--Sobic003G249700 Sobic002G286900--Sobic005G110800 Sobic007G178600 Sobic007G178600 Sobic002G286900--Sobic007G178600 Sobic006G115000--Sobic003G018600 Sobic006G115000--Sobic002G286900 Sobic010G023900 Sobic010G023900 Sobic006G115000--Sobic010G023900 Sobic009G233400 Sobic009G233400 Sobic006G115000--Sobic009G233400 Sobic006G115000--Sobic003G249700 Sobic010G069400 Sobic010G069400 Sobic006G115000--Sobic010G069400 Sobic006G115000--Sobic006G137100 Sobic003G387900 Sobic003G387900 Sobic006G115000--Sobic003G387900 Sobic002G331300 Sobic002G331300 Sobic006G115000--Sobic002G331300 Sobic006G047400 Sobic006G047400 Sobic009G166500--Sobic006G047400 Sobic009G166500--Sobic009G163800 Sobic003G346600 Sobic003G346600 Sobic009G166500--Sobic003G346600 Sobic009G166500--Sobic009G050300 Sobic001G091801 Sobic001G091801 Sobic009G166500--Sobic001G091801 Sobic002G081600 Sobic002G081600 Sobic009G166500--Sobic002G081600 Sobic001G374700 Sobic001G374700 Sobic009G166500--Sobic001G374700 Sobic009G166500--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic009G166500--Sobic010G060500 Sobic002G406500 Sobic002G406500 Sobic001G377800--Sobic002G406500 Sobic004G104100 Sobic004G104100 Sobic001G377800--Sobic004G104100 Sobic001G085400 Sobic001G085400 Sobic001G377800--Sobic001G085400 Sobic001G377800--Sobic001G091801 Sobic007G019000 Sobic007G019000 Sobic001G377800--Sobic007G019000 Sobic006G221200 Sobic006G221200 Sobic001G377800--Sobic006G221200 Sobic006G081100 Sobic006G081100 Sobic001G377800--Sobic006G081100 Sobic002G049300 Sobic002G049300 Sobic001G377800--Sobic002G049300 Sobic001G377800--Sobic009G050300 Sobic005G110800--Sobic009G166500 Sobic005G110800--Sobic002G286900 Sobic001G493001 Sobic001G493001 Sobic005G110800--Sobic001G493001 Sobic005G110800--Sobic002G081600 Sobic005G110800--Sobic009G050300 Sobic005G110800--Sobic004G008400 Sobic005G110800--Sobic009G163800 Sobic005G110800--Sobic003G346600 Sobic001G130301 Sobic001G130301 Sobic005G110800--Sobic001G130301 Sobic006G116700 Sobic006G116700 Sobic009G050300--Sobic006G116700 Sobic009G050300--Sobic004G008400 Sobic007G197800 Sobic007G197800 Sobic009G050300--Sobic007G197800 Sobic009G050300--Sobic002G081600 Sobic009G050300--Sobic003G346600 Sobic009G215200 Sobic009G215200 Sobic009G050300--Sobic009G215200 Sobic009G050300--Sobic001G403500 Sobic001G018900 Sobic001G018900 Sobic009G050300--Sobic001G018900 Sobic002G379500 Sobic002G379500 Sobic009G050300--Sobic002G379500 Sobic006G213000 Sobic006G213000 Sobic006G137100--Sobic006G213000 Sobic006G137100--Sobic003G387900 Sobic002G056200 Sobic002G056200 Sobic006G137100--Sobic002G056200 Sobic006G137100--Sobic009G050300 Sobic006G137100--Sobic003G346600 Sobic006G137100--Sobic001G403500 Sobic006G137100--Sobic010G060500 Sobic006G137100--Sobic004G008400 Sobic002G047600 Sobic002G047600 Sobic006G137100--Sobic002G047600 Sobic009G163800--Sobic009G166500 Sobic009G163800--Sobic009G050300 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic009G163800--Sobic006G047400 Sobic003G408100 Sobic003G408100 Sobic009G163800--Sobic003G408100 Sobic004G331400 Sobic004G331400 Sobic009G163800--Sobic004G331400 Sobic009G163800--Sobic002G081600 Sobic009G163800--Sobic001G091801 Sobic007G019400 Sobic007G019400 Sobic003G249700--Sobic007G019400 Sobic003G249700--Sobic001G226500 Sobic001G039400 Sobic001G039400 Sobic003G249700--Sobic001G039400 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic003G249700--Sobic007G178600 Sobic003G249700--Sobic004G008400 Sobic003G249700--Sobic001G085400 Sobic003G109600 Sobic003G109600 Sobic003G249700--Sobic003G109600
Octagon: transcription factors


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