Gene annotation
Transcriptome id Sobic.001G014500.2,Sobic.001G014500.1
Synonym Sb01g001420, NRPD8B, NRPB8B, NRPE8B
Functional annotation DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed
UniProt C5WSY4 , A0A1Z5S3V0
Pfam PF03870
Panther DB PTHR10917
NCBI CDD KOG3400; RNA polymerase subunit 8
KEGG Orthology K03016; RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3
Gene Ontology GO:0006351; transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT3G59600 : RNA polymerase Rpb8
RAP-DB (Rice) LOC_Os06g48230.1 : DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed
MaizeGDB (Corn) Zm00025a016340
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G014500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
2 Sobic.001G172000 expressed protein -
3 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
4 Sobic.001G011200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
5 Sobic.001G483100 peptidase, T1 family, putative, expressed K02730: 20S proteasome subunit alpha 1
6 Sobic.003G018600 LSM domain containing protein, expressed K11097: SNRPE, small nuclear ribonucleoprotein E
7 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
8 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
9 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
10 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
11 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
12 Sobic.001G436200 S10/S20 domain containing ribosomal protein, putative, expressed K02969: RP-S20e, small subunit ribosomal protein S20e
13 Sobic.007G053300 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
14 Sobic.001G091801 - K02978: RP-S27e, small subunit ribosomal protein S27e
15 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
16 Sobic.001G226500 60S ribosomal protein L21-2, putative, expressed K02889: RP-L21e, large subunit ribosomal protein L21e
17 Sobic.006G081100 40S ribosomal protein S10, putative, expressed K02947: RP-S10e, small subunit ribosomal protein S10e
18 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
19 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
20 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e


Gene co-expression network
sample Sobic001G014500 Sobic001G014500 Sobic002G056200 Sobic002G056200 Sobic001G014500--Sobic002G056200 Sobic001G172000 Sobic001G172000 Sobic001G014500--Sobic001G172000 Sobic001G377800 Sobic001G377800 Sobic001G014500--Sobic001G377800 Sobic001G011200 Sobic001G011200 Sobic001G014500--Sobic001G011200 Sobic001G483100 Sobic001G483100 Sobic001G014500--Sobic001G483100 Sobic003G018600 Sobic003G018600 Sobic001G014500--Sobic003G018600 Sobic002G406500 Sobic002G406500 Sobic001G014500--Sobic002G406500 Sobic010G204500 Sobic010G204500 Sobic001G014500--Sobic010G204500 Sobic006G213000 Sobic006G213000 Sobic001G014500--Sobic006G213000 Sobic002G379500 Sobic002G379500 Sobic002G056200--Sobic002G379500 Sobic006G137100 Sobic006G137100 Sobic002G056200--Sobic006G137100 Sobic001G403500 Sobic001G403500 Sobic002G056200--Sobic001G403500 Sobic002G056200--Sobic006G213000 Sobic007G019400 Sobic007G019400 Sobic002G056200--Sobic007G019400 Sobic003G387900 Sobic003G387900 Sobic002G056200--Sobic003G387900 Sobic003G109600 Sobic003G109600 Sobic002G056200--Sobic003G109600 Sobic001G436200 Sobic001G436200 Sobic002G056200--Sobic001G436200 Sobic002G047600 Sobic002G047600 Sobic002G056200--Sobic002G047600 Sobic001G172000--Sobic001G014500 Sobic005G110800 Sobic005G110800 Sobic001G172000--Sobic005G110800 Sobic009G119900 Sobic009G119900 Sobic001G172000--Sobic009G119900 Sobic001G025600 Sobic001G025600 Sobic001G172000--Sobic001G025600 Sobic001G172000--Sobic001G377800 Sobic006G081100 Sobic006G081100 Sobic001G172000--Sobic006G081100 Sobic004G103700 Sobic004G103700 Sobic001G172000--Sobic004G103700 Sobic001G172000--Sobic007G019400 Sobic003G249700 Sobic003G249700 Sobic001G172000--Sobic003G249700 Sobic001G377800--Sobic002G406500 Sobic004G104100 Sobic004G104100 Sobic001G377800--Sobic004G104100 Sobic001G085400 Sobic001G085400 Sobic001G377800--Sobic001G085400 Sobic001G091801 Sobic001G091801 Sobic001G377800--Sobic001G091801 Sobic007G019000 Sobic007G019000 Sobic001G377800--Sobic007G019000 Sobic006G221200 Sobic006G221200 Sobic001G377800--Sobic006G221200 Sobic001G377800--Sobic006G081100 Sobic002G049300 Sobic002G049300 Sobic001G377800--Sobic002G049300 Sobic009G050300 Sobic009G050300 Sobic001G377800--Sobic009G050300 Sobic001G011200--Sobic001G436200 Sobic002G374900 Sobic002G374900 Sobic001G011200--Sobic002G374900 Sobic001G011200--Sobic001G091801 Sobic001G011200--Sobic002G056200 Sobic004G198400 Sobic004G198400 Sobic001G011200--Sobic004G198400 Sobic003G280700 Sobic003G280700 Sobic001G011200--Sobic003G280700 Sobic001G011200--Sobic001G403500 Sobic001G046300 Sobic001G046300 Sobic001G011200--Sobic001G046300 Sobic001G016400 Sobic001G016400 Sobic001G011200--Sobic001G016400 Sobic001G483100--Sobic010G204500 Sobic009G180000 Sobic009G180000 Sobic001G483100--Sobic009G180000 Sobic001G483100--Sobic001G014500 Sobic001G483100--Sobic002G056200 Sobic001G483100--Sobic003G249700 Sobic005G229300 Sobic005G229300 Sobic001G483100--Sobic005G229300 Sobic001G483100--Sobic002G379500 Sobic001G537200 Sobic001G537200 Sobic001G483100--Sobic001G537200 Sobic001G483100--Sobic003G109600 Sobic002G286900 Sobic002G286900 Sobic003G018600--Sobic002G286900 Sobic006G115000 Sobic006G115000 Sobic003G018600--Sobic006G115000 Sobic009G166500 Sobic009G166500 Sobic003G018600--Sobic009G166500 Sobic003G018600--Sobic001G377800 Sobic003G018600--Sobic005G110800 Sobic003G018600--Sobic009G050300 Sobic003G018600--Sobic006G137100 Sobic009G163800 Sobic009G163800 Sobic003G018600--Sobic009G163800 Sobic003G018600--Sobic003G249700 Sobic002G406500--Sobic001G085400 Sobic002G406500--Sobic001G377800 Sobic002G406500--Sobic001G436200 Sobic002G406500--Sobic002G056200 Sobic006G138100 Sobic006G138100 Sobic002G406500--Sobic006G138100 Sobic002G115000 Sobic002G115000 Sobic002G406500--Sobic002G115000 Sobic002G406500--Sobic002G049300 Sobic002G406500--Sobic002G047600 Sobic002G304900 Sobic002G304900 Sobic002G406500--Sobic002G304900 Sobic010G204500--Sobic001G403500 Sobic010G204500--Sobic001G483100 Sobic010G204500--Sobic001G016400 Sobic010G204500--Sobic009G050300 Sobic010G204500--Sobic009G180000 Sobic010G204500--Sobic002G056200 Sobic002G081600 Sobic002G081600 Sobic010G204500--Sobic002G081600 Sobic009G215200 Sobic009G215200 Sobic010G204500--Sobic009G215200 Sobic001G018900 Sobic001G018900 Sobic010G204500--Sobic001G018900 Sobic006G213000--Sobic006G137100 Sobic007G053300 Sobic007G053300 Sobic006G213000--Sobic007G053300 Sobic009G076400 Sobic009G076400 Sobic006G213000--Sobic009G076400 Sobic006G213000--Sobic003G387900 Sobic006G213000--Sobic002G379500 Sobic006G213000--Sobic002G056200 Sobic006G213000--Sobic007G019400 Sobic006G213000--Sobic002G081600 Sobic006G213000--Sobic001G403500
Octagon: transcription factors


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