Gene annotation
Transcriptome id Sobic.001G483100.1
Synonym Sb01g045210, PAA1
Functional annotation peptidase, T1 family, putative, expressed
UniProt C5WVT0
Pfam PF10584 PF00227
Panther DB PTHR11599 PTHR11599:SF11
NCBI CDD KOG0182; 20S proteasome, regulatory subunit alpha type PSMA6/SCL1
KEGG Orthology K02730; 20S proteasome subunit alpha 1
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process GO:0004175endopeptidase activity GO:0005839proteasome core complex GO:0004298threonine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT5G35590 : proteasome alpha subunit A1
RAP-DB (Rice) LOC_Os03g08280.1 : peptidase, T1 family, putative, expressed
MaizeGDB (Corn) Zm00025a000919 , Zm00025a053286
Brachypodium KQK23314
Barley HORVU4Hr1G076770.1 , HORVU4Hr1G076770.2
Wheat TraesCS4A02G008300 , TraesCS4D02G295500
Populus -


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cDNA sequences
Sobic.001G483100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
2 Sobic.009G180000 OsCam1-3 - Calmodulin, expressed K02183: calmodulin
3 Sobic.001G014500 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed K03016: RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3
4 Sobic.002G056200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
5 Sobic.003G249700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
6 Sobic.005G229300 ribosomal protein S2, putative, expressed K02998: RP-SAe, small subunit ribosomal protein SAe
7 Sobic.002G379500 40S ribosomal protein S6, putative, expressed K02991: RP-S6e, small subunit ribosomal protein S6e
8 Sobic.001G537200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
9 Sobic.003G109600 40S ribosomal protein S5, putative, expressed K02989: RP-S5e, small subunit ribosomal protein S5e
10 Sobic.002G263800 peptidase, T1 family, putative, expressed K02736: 20S proteasome subunit beta 7
11 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
12 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
13 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
14 Sobic.001G533500 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17777: mitochondrial import inner membrane translocase subunit TIM9
15 Sobic.003G387900 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
16 Sobic.007G053300 40S ribosomal protein S3-1, putative, expressed K02985: RP-S3e, small subunit ribosomal protein S3e
17 Sobic.003G443300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -
18 Sobic.007G019400 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
19 Sobic.004G310300 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
20 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e


Gene co-expression network
sample Sobic001G483100 Sobic001G483100 Sobic010G204500 Sobic010G204500 Sobic001G483100--Sobic010G204500 Sobic009G180000 Sobic009G180000 Sobic001G483100--Sobic009G180000 Sobic001G014500 Sobic001G014500 Sobic001G483100--Sobic001G014500 Sobic002G056200 Sobic002G056200 Sobic001G483100--Sobic002G056200 Sobic003G249700 Sobic003G249700 Sobic001G483100--Sobic003G249700 Sobic005G229300 Sobic005G229300 Sobic001G483100--Sobic005G229300 Sobic002G379500 Sobic002G379500 Sobic001G483100--Sobic002G379500 Sobic001G537200 Sobic001G537200 Sobic001G483100--Sobic001G537200 Sobic003G109600 Sobic003G109600 Sobic001G483100--Sobic003G109600 Sobic001G403500 Sobic001G403500 Sobic010G204500--Sobic001G403500 Sobic010G204500--Sobic001G483100 Sobic001G016400 Sobic001G016400 Sobic010G204500--Sobic001G016400 Sobic009G050300 Sobic009G050300 Sobic010G204500--Sobic009G050300 Sobic010G204500--Sobic009G180000 Sobic010G204500--Sobic002G056200 Sobic002G081600 Sobic002G081600 Sobic010G204500--Sobic002G081600 Sobic009G215200 Sobic009G215200 Sobic010G204500--Sobic009G215200 Sobic001G018900 Sobic001G018900 Sobic010G204500--Sobic001G018900 Sobic009G180000--Sobic010G204500 Sobic007G018300 Sobic007G018300 Sobic009G180000--Sobic007G018300 Sobic001G533500 Sobic001G533500 Sobic009G180000--Sobic001G533500 Sobic009G180000--Sobic001G016400 Sobic009G180000--Sobic001G483100 Sobic003G125650 Sobic003G125650 Sobic009G180000--Sobic003G125650 Sobic007G190800 Sobic007G190800 Sobic009G180000--Sobic007G190800 Sobic010G230700 Sobic010G230700 Sobic009G180000--Sobic010G230700 Sobic009G180000--Sobic009G050300 Sobic001G014500--Sobic002G056200 Sobic001G172000 Sobic001G172000 Sobic001G014500--Sobic001G172000 Sobic001G377800 Sobic001G377800 Sobic001G014500--Sobic001G377800 Sobic001G011200 Sobic001G011200 Sobic001G014500--Sobic001G011200 Sobic001G014500--Sobic001G483100 Sobic003G018600 Sobic003G018600 Sobic001G014500--Sobic003G018600 Sobic002G406500 Sobic002G406500 Sobic001G014500--Sobic002G406500 Sobic001G014500--Sobic010G204500 Sobic006G213000 Sobic006G213000 Sobic001G014500--Sobic006G213000 Sobic002G056200--Sobic002G379500 Sobic006G137100 Sobic006G137100 Sobic002G056200--Sobic006G137100 Sobic002G056200--Sobic001G403500 Sobic002G056200--Sobic006G213000 Sobic007G019400 Sobic007G019400 Sobic002G056200--Sobic007G019400 Sobic003G387900 Sobic003G387900 Sobic002G056200--Sobic003G387900 Sobic002G056200--Sobic003G109600 Sobic001G436200 Sobic001G436200 Sobic002G056200--Sobic001G436200 Sobic002G047600 Sobic002G047600 Sobic002G056200--Sobic002G047600 Sobic003G249700--Sobic007G019400 Sobic001G226500 Sobic001G226500 Sobic003G249700--Sobic001G226500 Sobic001G039400 Sobic001G039400 Sobic003G249700--Sobic001G039400 Sobic003G249700--Sobic003G387900 Sobic003G249700--Sobic002G047600 Sobic007G178600 Sobic007G178600 Sobic003G249700--Sobic007G178600 Sobic004G008400 Sobic004G008400 Sobic003G249700--Sobic004G008400 Sobic001G085400 Sobic001G085400 Sobic003G249700--Sobic001G085400 Sobic003G249700--Sobic003G109600 Sobic005G229300--Sobic002G379500 Sobic005G229300--Sobic001G533500 Sobic005G229300--Sobic007G018300 Sobic005G229300--Sobic001G483100 Sobic005G229300--Sobic003G109600 Sobic005G229300--Sobic003G249700 Sobic009G223300 Sobic009G223300 Sobic005G229300--Sobic009G223300 Sobic007G019000 Sobic007G019000 Sobic005G229300--Sobic007G019000 Sobic005G229300--Sobic007G019400 Sobic002G379500--Sobic009G050300 Sobic002G379500--Sobic006G213000 Sobic002G379500--Sobic002G056200 Sobic002G379500--Sobic001G403500 Sobic006G116700 Sobic006G116700 Sobic002G379500--Sobic006G116700 Sobic002G379500--Sobic003G109600 Sobic007G197800 Sobic007G197800 Sobic002G379500--Sobic007G197800 Sobic004G198400 Sobic004G198400 Sobic002G379500--Sobic004G198400 Sobic002G379500--Sobic004G008400 Sobic001G537200--Sobic009G050300 Sobic001G537200--Sobic001G018900 Sobic001G537200--Sobic007G197800 Sobic001G537200--Sobic002G379500 Sobic001G537200--Sobic009G215200 Sobic001G537200--Sobic007G019000 Sobic001G537200--Sobic006G116700 Sobic001G130301 Sobic001G130301 Sobic001G537200--Sobic001G130301 Sobic001G537200--Sobic001G403500 Sobic003G109600--Sobic002G379500 Sobic003G109600--Sobic009G223300 Sobic003G109600--Sobic001G403500 Sobic003G109600--Sobic001G039400 Sobic003G109600--Sobic003G249700 Sobic003G109600--Sobic002G056200 Sobic003G109600--Sobic002G047600 Sobic003G109600--Sobic007G019400 Sobic003G436700 Sobic003G436700 Sobic003G109600--Sobic003G436700
Octagon: transcription factors


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