Gene annotation
Transcriptome id Sobic.002G263800.1
Synonym PBG1, Sb02g029840
Functional annotation peptidase, T1 family, putative, expressed
UniProt C5X5E3
Pfam PF00227
Panther DB PTHR11599 PTHR11599:SF5
NCBI CDD KOG0185; 20S proteasome, regulatory subunit beta type PSMB4/PRE4
KEGG Orthology K02736; 20S proteasome subunit beta 7
Gene Ontology GO:0005839; proteasome core complex GO:0004298threonine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G56450 : 20S proteasome beta subunit G1
RAP-DB (Rice) LOC_Os09g33986.2 : peptidase, T1 family, putative, expressed
MaizeGDB (Corn) Zm00025a014345 , Zm00025a047657
Brachypodium KQJ91017
Barley HORVU5Hr1G078810.4 , HORVU5Hr1G078810.3 , HORVU5Hr1G078810.2 , HORVU5Hr1G078810.1
Wheat TraesCS4B02G099100 , TraesCS4A02G220400 , TraesCS4A02G220400 , TraesCS5A02G301400 , TraesCS4D02G095100 , TraesCS5D02G307400 , TraesCS5B02G299900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
2 Sobic.007G095400 expressed protein -
3 Sobic.001G483100 peptidase, T1 family, putative, expressed K02730: 20S proteasome subunit alpha 1
4 Sobic.009G180000 OsCam1-3 - Calmodulin, expressed K02183: calmodulin
5 Sobic.010G173100 elongation factor 1-gamma, putative, expressed K03233: elongation factor 1-gamma
6 Sobic.010G039800 expressed protein -
7 Sobic.009G016201 - K09481: SEC61B, protein transport protein SEC61 subunit beta
8 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
9 Sobic.004G310300 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
10 Sobic.010G042800 peptidase, T1 family, putative, expressed K02737: 20S proteasome subunit beta 5
11 Sobic.008G130400 prefoldin, putative, expressed -
12 Sobic.002G373800 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
13 Sobic.002G406500 elongation factor protein, putative, expressed K03232: elongation factor 1-beta
14 Sobic.004G248800 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
15 Sobic.001G014500 DNA-directed RNA polymerases I, II, and III subunit RPABC3, putative, expressed K03016: RPB8, DNA-directed RNA polymerases I, II, and III subunit RPABC3
16 Sobic.004G066800 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
17 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
18 Sobic.001G132100 expressed protein -
19 Sobic.002G218000 expressed protein K13528: mediator of RNA polymerase II transcription subunit 20
20 Sobic.010G182600 elongation factor Tu, putative, expressed K03231: elongation factor 1-alpha


Gene co-expression network
sample Sobic002G263800 Sobic002G263800 Sobic008G161800 Sobic008G161800 Sobic002G263800--Sobic008G161800 Sobic007G095400 Sobic007G095400 Sobic002G263800--Sobic007G095400 Sobic001G483100 Sobic001G483100 Sobic002G263800--Sobic001G483100 Sobic009G180000 Sobic009G180000 Sobic002G263800--Sobic009G180000 Sobic010G173100 Sobic010G173100 Sobic002G263800--Sobic010G173100 Sobic010G039800 Sobic010G039800 Sobic002G263800--Sobic010G039800 Sobic009G016201 Sobic009G016201 Sobic002G263800--Sobic009G016201 Sobic010G204500 Sobic010G204500 Sobic002G263800--Sobic010G204500 Sobic004G310300 Sobic004G310300 Sobic002G263800--Sobic004G310300 Sobic008G161800--Sobic002G263800 Sobic006G141500 Sobic006G141500 Sobic008G161800--Sobic006G141500 Sobic001G415500 Sobic001G415500 Sobic008G161800--Sobic001G415500 Sobic003G253000 Sobic003G253000 Sobic008G161800--Sobic003G253000 Sobic006G108400 Sobic006G108400 Sobic008G161800--Sobic006G108400 Sobic008G161800--Sobic007G095400 Sobic010G154700 Sobic010G154700 Sobic008G161800--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic008G161800--Sobic001G132100 Sobic004G248800 Sobic004G248800 Sobic008G161800--Sobic004G248800 Sobic007G095400--Sobic002G263800 Sobic007G095400--Sobic009G016201 Sobic007G095400--Sobic008G161800 Sobic007G095400--Sobic010G039800 Sobic007G095400--Sobic009G180000 Sobic004G196300 Sobic004G196300 Sobic007G095400--Sobic004G196300 Sobic007G095400--Sobic001G483100 Sobic007G095400--Sobic010G173100 Sobic010G042800 Sobic010G042800 Sobic007G095400--Sobic010G042800 Sobic001G483100--Sobic010G204500 Sobic001G483100--Sobic009G180000 Sobic001G014500 Sobic001G014500 Sobic001G483100--Sobic001G014500 Sobic002G056200 Sobic002G056200 Sobic001G483100--Sobic002G056200 Sobic003G249700 Sobic003G249700 Sobic001G483100--Sobic003G249700 Sobic005G229300 Sobic005G229300 Sobic001G483100--Sobic005G229300 Sobic002G379500 Sobic002G379500 Sobic001G483100--Sobic002G379500 Sobic001G537200 Sobic001G537200 Sobic001G483100--Sobic001G537200 Sobic003G109600 Sobic003G109600 Sobic001G483100--Sobic003G109600 Sobic009G180000--Sobic010G204500 Sobic007G018300 Sobic007G018300 Sobic009G180000--Sobic007G018300 Sobic001G533500 Sobic001G533500 Sobic009G180000--Sobic001G533500 Sobic001G016400 Sobic001G016400 Sobic009G180000--Sobic001G016400 Sobic009G180000--Sobic001G483100 Sobic003G125650 Sobic003G125650 Sobic009G180000--Sobic003G125650 Sobic007G190800 Sobic007G190800 Sobic009G180000--Sobic007G190800 Sobic010G230700 Sobic010G230700 Sobic009G180000--Sobic010G230700 Sobic009G050300 Sobic009G050300 Sobic009G180000--Sobic009G050300 Sobic010G173100--Sobic002G263800 Sobic002G373800 Sobic002G373800 Sobic010G173100--Sobic002G373800 Sobic003G107600 Sobic003G107600 Sobic010G173100--Sobic003G107600 Sobic010G182600 Sobic010G182600 Sobic010G173100--Sobic010G182600 Sobic009G065400 Sobic009G065400 Sobic010G173100--Sobic009G065400 Sobic010G173100--Sobic008G161800 Sobic002G406500 Sobic002G406500 Sobic010G173100--Sobic002G406500 Sobic001G011200 Sobic001G011200 Sobic010G173100--Sobic001G011200 Sobic001G046300 Sobic001G046300 Sobic010G173100--Sobic001G046300 Sobic010G039800--Sobic002G263800 Sobic010G039800--Sobic007G095400 Sobic010G039800--Sobic004G248800 Sobic001G529000 Sobic001G529000 Sobic010G039800--Sobic001G529000 Sobic010G039800--Sobic008G161800 Sobic010G039800--Sobic009G016201 Sobic002G218000 Sobic002G218000 Sobic010G039800--Sobic002G218000 Sobic010G039800--Sobic002G373800 Sobic009G036900 Sobic009G036900 Sobic010G039800--Sobic009G036900 Sobic009G016201--Sobic002G263800 Sobic009G016201--Sobic007G095400 Sobic008G132800 Sobic008G132800 Sobic009G016201--Sobic008G132800 Sobic004G172700 Sobic004G172700 Sobic009G016201--Sobic004G172700 Sobic003G249800 Sobic003G249800 Sobic009G016201--Sobic003G249800 Sobic001G037000 Sobic001G037000 Sobic009G016201--Sobic001G037000 Sobic008G161000 Sobic008G161000 Sobic009G016201--Sobic008G161000 Sobic010G237000 Sobic010G237000 Sobic009G016201--Sobic010G237000 Sobic010G029400 Sobic010G029400 Sobic009G016201--Sobic010G029400 Sobic001G403500 Sobic001G403500 Sobic010G204500--Sobic001G403500 Sobic010G204500--Sobic001G483100 Sobic010G204500--Sobic001G016400 Sobic010G204500--Sobic009G050300 Sobic010G204500--Sobic009G180000 Sobic010G204500--Sobic002G056200 Sobic002G081600 Sobic002G081600 Sobic010G204500--Sobic002G081600 Sobic009G215200 Sobic009G215200 Sobic010G204500--Sobic009G215200 Sobic001G018900 Sobic001G018900 Sobic010G204500--Sobic001G018900 Sobic009G119900 Sobic009G119900 Sobic004G310300--Sobic009G119900 Sobic004G259200 Sobic004G259200 Sobic004G310300--Sobic004G259200 Sobic007G051000 Sobic007G051000 Sobic004G310300--Sobic007G051000 Sobic001G018500 Sobic001G018500 Sobic004G310300--Sobic001G018500 Sobic004G310300--Sobic010G204500 Sobic003G155400 Sobic003G155400 Sobic004G310300--Sobic003G155400 Sobic004G066800 Sobic004G066800 Sobic004G310300--Sobic004G066800 Sobic001G513500 Sobic001G513500 Sobic004G310300--Sobic001G513500 Sobic005G188100 Sobic005G188100 Sobic004G310300--Sobic005G188100
Octagon: transcription factors


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