Gene annotation
Transcriptome id Sobic.008G161800.1
Synonym RPN6, ATS9, Sb08g020840
Functional annotation proteasome subunit, putative, expressed
UniProt C5YRI0
Pfam PF01399
Panther DB PTHR10678 PTHR10678:SF5
NCBI CDD -
KEGG Orthology K03036; PSMD11, 26S proteasome regulatory subunit N6
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G29150 : non-ATPase subunit 9
RAP-DB (Rice) LOC_Os04g36700.1 : proteasome subunit, putative, expressed
MaizeGDB (Corn) Zm00025a011245 , Zm00025a011246 , Zm00025a025325 , Zm00025a025322 , Zm00025a011239
Brachypodium KQJ82819 , KQK21241
Barley HORVU2Hr1G064590.1 , HORVU4Hr1G086010.2 , HORVU4Hr1G086010.1
Wheat TraesCS4B02G355700
Populus PNT16906 , PNT23627


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cDNA sequences
Sobic.008G161800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G263800 peptidase, T1 family, putative, expressed K02736: 20S proteasome subunit beta 7
2 Sobic.006G141500 expressed protein -
3 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
4 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
5 Sobic.006G108400 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
6 Sobic.007G095400 expressed protein -
7 Sobic.010G154700 - -
8 Sobic.001G132100 expressed protein -
9 Sobic.004G248800 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
10 Sobic.001G048832 - -
11 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
12 Sobic.010G039800 expressed protein -
13 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
14 Sobic.010G173100 elongation factor 1-gamma, putative, expressed K03233: elongation factor 1-gamma
15 Sobic.002G218000 expressed protein K13528: mediator of RNA polymerase II transcription subunit 20
16 Sobic.003G337000 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
17 Sobic.007G045600 MSP domain containing protein, expressed -
18 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
19 Sobic.010G243200 ZOS6-08 - C2H2 zinc finger protein, expressed K14816: pre-60S factor REI1
20 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic008G161800 Sobic008G161800 Sobic002G263800 Sobic002G263800 Sobic008G161800--Sobic002G263800 Sobic006G141500 Sobic006G141500 Sobic008G161800--Sobic006G141500 Sobic001G415500 Sobic001G415500 Sobic008G161800--Sobic001G415500 Sobic003G253000 Sobic003G253000 Sobic008G161800--Sobic003G253000 Sobic006G108400 Sobic006G108400 Sobic008G161800--Sobic006G108400 Sobic007G095400 Sobic007G095400 Sobic008G161800--Sobic007G095400 Sobic010G154700 Sobic010G154700 Sobic008G161800--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic008G161800--Sobic001G132100 Sobic004G248800 Sobic004G248800 Sobic008G161800--Sobic004G248800 Sobic002G263800--Sobic008G161800 Sobic002G263800--Sobic007G095400 Sobic001G483100 Sobic001G483100 Sobic002G263800--Sobic001G483100 Sobic009G180000 Sobic009G180000 Sobic002G263800--Sobic009G180000 Sobic010G173100 Sobic010G173100 Sobic002G263800--Sobic010G173100 Sobic010G039800 Sobic010G039800 Sobic002G263800--Sobic010G039800 Sobic009G016201 Sobic009G016201 Sobic002G263800--Sobic009G016201 Sobic010G204500 Sobic010G204500 Sobic002G263800--Sobic010G204500 Sobic004G310300 Sobic004G310300 Sobic002G263800--Sobic004G310300 Sobic006G141500--Sobic003G253000 Sobic010G243200 Sobic010G243200 Sobic006G141500--Sobic010G243200 Sobic002G282400 Sobic002G282400 Sobic006G141500--Sobic002G282400 Sobic002G218000 Sobic002G218000 Sobic006G141500--Sobic002G218000 Sobic004G300900 Sobic004G300900 Sobic006G141500--Sobic004G300900 Sobic003G350300 Sobic003G350300 Sobic006G141500--Sobic003G350300 Sobic006G141500--Sobic008G161800 Sobic006G141500--Sobic004G248800 Sobic002G046100 Sobic002G046100 Sobic006G141500--Sobic002G046100 Sobic001G007200 Sobic001G007200 Sobic001G415500--Sobic001G007200 Sobic001G415500--Sobic008G161800 Sobic001G415500--Sobic003G253000 Sobic009G146100 Sobic009G146100 Sobic001G415500--Sobic009G146100 Sobic001G415500--Sobic006G108400 Sobic001G415500--Sobic006G141500 Sobic004G049900 Sobic004G049900 Sobic001G415500--Sobic004G049900 Sobic004G293700 Sobic004G293700 Sobic001G415500--Sobic004G293700 Sobic010G121300 Sobic010G121300 Sobic001G415500--Sobic010G121300 Sobic003G253000--Sobic006G141500 Sobic003G253000--Sobic004G049900 Sobic002G267500 Sobic002G267500 Sobic003G253000--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic003G253000--Sobic004G272800 Sobic001G459200 Sobic001G459200 Sobic003G253000--Sobic001G459200 Sobic002G345300 Sobic002G345300 Sobic003G253000--Sobic002G345300 Sobic003G253000--Sobic002G046100 Sobic009G185800 Sobic009G185800 Sobic003G253000--Sobic009G185800 Sobic003G253000--Sobic006G108400 Sobic006G108400--Sobic004G049900 Sobic006G108400--Sobic003G253000 Sobic006G108400--Sobic008G161800 Sobic006G108400--Sobic009G185800 Sobic006G108400--Sobic001G415500 Sobic006G108400--Sobic004G272800 Sobic006G108400--Sobic001G459200 Sobic004G050000 Sobic004G050000 Sobic006G108400--Sobic004G050000 Sobic006G108400--Sobic002G267500 Sobic007G095400--Sobic002G263800 Sobic007G095400--Sobic009G016201 Sobic007G095400--Sobic008G161800 Sobic007G095400--Sobic010G039800 Sobic007G095400--Sobic009G180000 Sobic004G196300 Sobic004G196300 Sobic007G095400--Sobic004G196300 Sobic007G095400--Sobic001G483100 Sobic007G095400--Sobic010G173100 Sobic010G042800 Sobic010G042800 Sobic007G095400--Sobic010G042800 Sobic001G048832 Sobic001G048832 Sobic010G154700--Sobic001G048832 Sobic010G154700--Sobic001G132100 Sobic007G051000 Sobic007G051000 Sobic010G154700--Sobic007G051000 Sobic001G074700 Sobic001G074700 Sobic010G154700--Sobic001G074700 Sobic003G155400 Sobic003G155400 Sobic010G154700--Sobic003G155400 Sobic009G119900 Sobic009G119900 Sobic010G154700--Sobic009G119900 Sobic002G190900 Sobic002G190900 Sobic010G154700--Sobic002G190900 Sobic002G398901 Sobic002G398901 Sobic010G154700--Sobic002G398901 Sobic009G176000 Sobic009G176000 Sobic010G154700--Sobic009G176000 Sobic001G132100--Sobic001G048832 Sobic001G132100--Sobic010G154700 Sobic001G132100--Sobic002G190900 Sobic005G188100 Sobic005G188100 Sobic001G132100--Sobic005G188100 Sobic001G132100--Sobic007G051000 Sobic001G132100--Sobic002G398901 Sobic001G132100--Sobic009G119900 Sobic010G018400 Sobic010G018400 Sobic001G132100--Sobic010G018400 Sobic001G132100--Sobic004G272800 Sobic004G248800--Sobic006G141500 Sobic001G529000 Sobic001G529000 Sobic004G248800--Sobic001G529000 Sobic004G248800--Sobic010G039800 Sobic004G248800--Sobic003G253000 Sobic004G248800--Sobic004G293700 Sobic004G248800--Sobic008G161800 Sobic004G248800--Sobic002G263800 Sobic004G248800--Sobic002G218000 Sobic003G249800 Sobic003G249800 Sobic004G248800--Sobic003G249800
Octagon: transcription factors


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