Gene annotation
Transcriptome id Sobic.001G415500.1
Synonym Sb01g039130
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WPB0
Pfam PF04641 PF15906
Panther DB PTHR13063 PTHR13063:SF10
NCBI CDD KOG3039; Uncharacterized conserved protein
KEGG Orthology K13125; nitric oxide synthase-interacting protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G61620 : phosphoinositide binding
RAP-DB (Rice) LOC_Os03g17170.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a052734 , Zm00025a052731 , Zm00025a052733 , Zm00025a001887 , Zm00025a052576
Brachypodium KQK22292
Barley HORVU4Hr1G058600.1 , HORVU4Hr1G058600.2
Wheat TraesCS4A02G101400 , TraesCS4B02G203200 , TraesCS4D02G204100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G007200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
2 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
3 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
4 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
5 Sobic.006G108400 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
6 Sobic.006G141500 expressed protein -
7 Sobic.004G049900 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
8 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
9 Sobic.010G121300 nitrate-induced NOI protein, putative, expressed -
10 Sobic.003G337000 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
11 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
12 Sobic.010G253800 expressed protein -
13 Sobic.001G073000 expressed protein K09659: dolichol-phosphate mannosyltransferase subunit 3
14 Sobic.010G243200 ZOS6-08 - C2H2 zinc finger protein, expressed K14816: pre-60S factor REI1
15 Sobic.001G054200 green ripe-like, putative, expressed -
16 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
17 Sobic.004G086600 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
18 Sobic.004G248800 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
19 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
20 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4


Gene co-expression network
sample Sobic001G415500 Sobic001G415500 Sobic001G007200 Sobic001G007200 Sobic001G415500--Sobic001G007200 Sobic008G161800 Sobic008G161800 Sobic001G415500--Sobic008G161800 Sobic003G253000 Sobic003G253000 Sobic001G415500--Sobic003G253000 Sobic009G146100 Sobic009G146100 Sobic001G415500--Sobic009G146100 Sobic006G108400 Sobic006G108400 Sobic001G415500--Sobic006G108400 Sobic006G141500 Sobic006G141500 Sobic001G415500--Sobic006G141500 Sobic004G049900 Sobic004G049900 Sobic001G415500--Sobic004G049900 Sobic004G293700 Sobic004G293700 Sobic001G415500--Sobic004G293700 Sobic010G121300 Sobic010G121300 Sobic001G415500--Sobic010G121300 Sobic010G083700 Sobic010G083700 Sobic001G007200--Sobic010G083700 Sobic001G007200--Sobic001G415500 Sobic007G186300 Sobic007G186300 Sobic001G007200--Sobic007G186300 Sobic010G253800 Sobic010G253800 Sobic001G007200--Sobic010G253800 Sobic004G086600 Sobic004G086600 Sobic001G007200--Sobic004G086600 Sobic001G073000 Sobic001G073000 Sobic001G007200--Sobic001G073000 Sobic009G246950 Sobic009G246950 Sobic001G007200--Sobic009G246950 Sobic004G141700 Sobic004G141700 Sobic001G007200--Sobic004G141700 Sobic001G007200--Sobic009G146100 Sobic002G263800 Sobic002G263800 Sobic008G161800--Sobic002G263800 Sobic008G161800--Sobic006G141500 Sobic008G161800--Sobic001G415500 Sobic008G161800--Sobic003G253000 Sobic008G161800--Sobic006G108400 Sobic007G095400 Sobic007G095400 Sobic008G161800--Sobic007G095400 Sobic010G154700 Sobic010G154700 Sobic008G161800--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic008G161800--Sobic001G132100 Sobic004G248800 Sobic004G248800 Sobic008G161800--Sobic004G248800 Sobic003G253000--Sobic006G141500 Sobic003G253000--Sobic004G049900 Sobic002G267500 Sobic002G267500 Sobic003G253000--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic003G253000--Sobic004G272800 Sobic001G459200 Sobic001G459200 Sobic003G253000--Sobic001G459200 Sobic002G345300 Sobic002G345300 Sobic003G253000--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic003G253000--Sobic002G046100 Sobic009G185800 Sobic009G185800 Sobic003G253000--Sobic009G185800 Sobic003G253000--Sobic006G108400 Sobic009G146100--Sobic010G253800 Sobic009G146100--Sobic003G253000 Sobic009G146100--Sobic001G415500 Sobic001G433400 Sobic001G433400 Sobic009G146100--Sobic001G433400 Sobic009G135600 Sobic009G135600 Sobic009G146100--Sobic009G135600 Sobic009G146100--Sobic008G161800 Sobic009G146100--Sobic007G186300 Sobic001G461900 Sobic001G461900 Sobic009G146100--Sobic001G461900 Sobic007G045600 Sobic007G045600 Sobic009G146100--Sobic007G045600 Sobic006G108400--Sobic004G049900 Sobic006G108400--Sobic003G253000 Sobic006G108400--Sobic008G161800 Sobic006G108400--Sobic009G185800 Sobic006G108400--Sobic001G415500 Sobic006G108400--Sobic004G272800 Sobic006G108400--Sobic001G459200 Sobic004G050000 Sobic004G050000 Sobic006G108400--Sobic004G050000 Sobic006G108400--Sobic002G267500 Sobic006G141500--Sobic003G253000 Sobic010G243200 Sobic010G243200 Sobic006G141500--Sobic010G243200 Sobic002G282400 Sobic002G282400 Sobic006G141500--Sobic002G282400 Sobic002G218000 Sobic002G218000 Sobic006G141500--Sobic002G218000 Sobic004G300900 Sobic004G300900 Sobic006G141500--Sobic004G300900 Sobic003G350300 Sobic003G350300 Sobic006G141500--Sobic003G350300 Sobic006G141500--Sobic008G161800 Sobic006G141500--Sobic004G248800 Sobic006G141500--Sobic002G046100 Sobic004G049900--Sobic003G253000 Sobic004G049900--Sobic009G185800 Sobic004G049900--Sobic006G108400 Sobic003G130800 Sobic003G130800 Sobic004G049900--Sobic003G130800 Sobic004G049900--Sobic001G459200 Sobic004G049900--Sobic004G050000 Sobic004G049900--Sobic001G415500 Sobic004G049900--Sobic002G267500 Sobic001G281400 Sobic001G281400 Sobic004G049900--Sobic001G281400 Sobic004G293700--Sobic010G253800 Sobic004G079100 Sobic004G079100 Sobic004G293700--Sobic004G079100 Sobic004G293700--Sobic010G083700 Sobic001G054200 Sobic001G054200 Sobic004G293700--Sobic001G054200 Sobic004G293700--Sobic004G248800 Sobic009G171700 Sobic009G171700 Sobic004G293700--Sobic009G171700 Sobic002G264400 Sobic002G264400 Sobic004G293700--Sobic002G264400 Sobic004G293700--Sobic006G141500 Sobic003G220600 Sobic003G220600 Sobic004G293700--Sobic003G220600 Sobic009G178100 Sobic009G178100 Sobic010G121300--Sobic009G178100 Sobic002G155500 Sobic002G155500 Sobic010G121300--Sobic002G155500 Sobic004G225500 Sobic004G225500 Sobic010G121300--Sobic004G225500 Sobic010G121300--Sobic006G141500 Sobic010G121300--Sobic003G253000 Sobic010G121300--Sobic009G185800 Sobic010G121300--Sobic001G415500 Sobic010G121300--Sobic004G300900 Sobic010G121300--Sobic009G146100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.