Gene annotation
Transcriptome id Sobic.003G337000.1
Synonym ATUBC11, UBC11, Sb03g038120
Functional annotation ubiquitin-conjugating enzyme, putative, expressed
UniProt C5XN94
Pfam PF05773
Panther DB PTHR24068
NCBI CDD KOG0417; Ubiquitin-protein ligase
KEGG Orthology K06689; UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G08690 : ubiquitin-conjugating enzyme 11
RAP-DB (Rice) LOC_Os01g60410.1 : ubiquitin-conjugating enzyme, putative, expressed
MaizeGDB (Corn) Zm00025a037795 , Zm00025a009384 , Zm00025a027071 , Zm00025a039774
Brachypodium KQK10337 , KQK05734 , KQK05735 , KQK05736 , KQK05737 , KQK05732
Barley HORVU0Hr1G002220.2 , HORVU1Hr1G069530.2 , HORVU1Hr1G069530.1 , HORVU3Hr1G080790.1 , HORVU3Hr1G080790.3 , HORVU3Hr1G080790.2 , HORVU3Hr1G080790.4
Wheat TraesCS3D02G336300 , TraesCS3D02G336300 , TraesCS1B02G311400 , TraesCS3A02G342500 , TraesCS3A02G342500 , TraesCS1D02G301300 , TraesCS3B02G374500 , TraesCS1A02G301600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G337000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G174900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
2 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
3 Sobic.001G054200 green ripe-like, putative, expressed -
4 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
5 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
6 Sobic.004G248800 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
7 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
8 Sobic.009G185800 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
9 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
10 Sobic.006G108400 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
11 Sobic.001G459200 MYB family transcription factor, putative, expressed -
12 Sobic.004G130100 ubiquitin-conjugating enzyme, putative, expressed K10704: ubiquitin-conjugating enzyme E2 variant
13 Sobic.004G293700 peroxisomal biogenesis factor 19, putative, expressed K13337: peroxin-19
14 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
15 Sobic.004G300900 OsGrx_C3 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3
16 Sobic.006G141500 expressed protein -
17 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
18 Sobic.004G049900 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
19 Sobic.010G135000 thioredoxin reductase 2, putative, expressed K00384: trxB, thioredoxin reductase (NADPH)
20 Sobic.004G330700 CAF1 family ribonuclease containing protein, putative, expressed K12581: CNOT7_8, CAF1, CCR4-NOT transcription complex subunit 7/8


Gene co-expression network
sample Sobic003G337000 Sobic003G337000 Sobic009G174900 Sobic009G174900 Sobic003G337000--Sobic009G174900 Sobic001G415500 Sobic001G415500 Sobic003G337000--Sobic001G415500 Sobic001G054200 Sobic001G054200 Sobic003G337000--Sobic001G054200 Sobic006G232200 Sobic006G232200 Sobic003G337000--Sobic006G232200 Sobic008G161800 Sobic008G161800 Sobic003G337000--Sobic008G161800 Sobic004G248800 Sobic004G248800 Sobic003G337000--Sobic004G248800 Sobic003G253000 Sobic003G253000 Sobic003G337000--Sobic003G253000 Sobic009G185800 Sobic009G185800 Sobic003G337000--Sobic009G185800 Sobic009G135600 Sobic009G135600 Sobic003G337000--Sobic009G135600 Sobic009G174900--Sobic003G337000 Sobic002G400000 Sobic002G400000 Sobic009G174900--Sobic002G400000 Sobic004G327300 Sobic004G327300 Sobic009G174900--Sobic004G327300 Sobic009G174900--Sobic009G135600 Sobic007G168600 Sobic007G168600 Sobic009G174900--Sobic007G168600 Sobic006G212100 Sobic006G212100 Sobic009G174900--Sobic006G212100 Sobic001G491100 Sobic001G491100 Sobic009G174900--Sobic001G491100 Sobic002G134001 Sobic002G134001 Sobic009G174900--Sobic002G134001 Sobic009G174900--Sobic001G054200 Sobic001G007200 Sobic001G007200 Sobic001G415500--Sobic001G007200 Sobic001G415500--Sobic008G161800 Sobic001G415500--Sobic003G253000 Sobic009G146100 Sobic009G146100 Sobic001G415500--Sobic009G146100 Sobic006G108400 Sobic006G108400 Sobic001G415500--Sobic006G108400 Sobic006G141500 Sobic006G141500 Sobic001G415500--Sobic006G141500 Sobic004G049900 Sobic004G049900 Sobic001G415500--Sobic004G049900 Sobic004G293700 Sobic004G293700 Sobic001G415500--Sobic004G293700 Sobic010G121300 Sobic010G121300 Sobic001G415500--Sobic010G121300 Sobic010G083700 Sobic010G083700 Sobic001G054200--Sobic010G083700 Sobic006G263900 Sobic006G263900 Sobic001G054200--Sobic006G263900 Sobic001G054200--Sobic006G212100 Sobic007G186300 Sobic007G186300 Sobic001G054200--Sobic007G186300 Sobic001G054200--Sobic004G293700 Sobic009G246950 Sobic009G246950 Sobic001G054200--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic001G054200--Sobic004G079100 Sobic001G054200--Sobic006G232200 Sobic003G115800 Sobic003G115800 Sobic001G054200--Sobic003G115800 Sobic003G124800 Sobic003G124800 Sobic006G232200--Sobic003G124800 Sobic007G045600 Sobic007G045600 Sobic006G232200--Sobic007G045600 Sobic001G143300 Sobic001G143300 Sobic006G232200--Sobic001G143300 Sobic009G198500 Sobic009G198500 Sobic006G232200--Sobic009G198500 Sobic004G130100 Sobic004G130100 Sobic006G232200--Sobic004G130100 Sobic003G323600 Sobic003G323600 Sobic006G232200--Sobic003G323600 Sobic006G232200--Sobic001G054200 Sobic006G232200--Sobic008G161800 Sobic001G388200 Sobic001G388200 Sobic006G232200--Sobic001G388200 Sobic002G263800 Sobic002G263800 Sobic008G161800--Sobic002G263800 Sobic008G161800--Sobic006G141500 Sobic008G161800--Sobic001G415500 Sobic008G161800--Sobic003G253000 Sobic008G161800--Sobic006G108400 Sobic007G095400 Sobic007G095400 Sobic008G161800--Sobic007G095400 Sobic010G154700 Sobic010G154700 Sobic008G161800--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic008G161800--Sobic001G132100 Sobic008G161800--Sobic004G248800 Sobic004G248800--Sobic006G141500 Sobic001G529000 Sobic001G529000 Sobic004G248800--Sobic001G529000 Sobic010G039800 Sobic010G039800 Sobic004G248800--Sobic010G039800 Sobic004G248800--Sobic003G253000 Sobic004G248800--Sobic004G293700 Sobic004G248800--Sobic008G161800 Sobic004G248800--Sobic002G263800 Sobic002G218000 Sobic002G218000 Sobic004G248800--Sobic002G218000 Sobic003G249800 Sobic003G249800 Sobic004G248800--Sobic003G249800 Sobic003G253000--Sobic006G141500 Sobic003G253000--Sobic004G049900 Sobic002G267500 Sobic002G267500 Sobic003G253000--Sobic002G267500 Sobic004G272800 Sobic004G272800 Sobic003G253000--Sobic004G272800 Sobic001G459200 Sobic001G459200 Sobic003G253000--Sobic001G459200 Sobic002G345300 Sobic002G345300 Sobic003G253000--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic003G253000--Sobic002G046100 Sobic003G253000--Sobic009G185800 Sobic003G253000--Sobic006G108400 Sobic009G185800--Sobic001G459200 Sobic009G185800--Sobic004G049900 Sobic009G185800--Sobic003G253000 Sobic003G130800 Sobic003G130800 Sobic009G185800--Sobic003G130800 Sobic009G185800--Sobic006G108400 Sobic003G350300 Sobic003G350300 Sobic009G185800--Sobic003G350300 Sobic004G330700 Sobic004G330700 Sobic009G185800--Sobic004G330700 Sobic009G185800--Sobic004G272800 Sobic003G181500 Sobic003G181500 Sobic009G185800--Sobic003G181500 Sobic001G461900 Sobic001G461900 Sobic009G135600--Sobic001G461900 Sobic003G349300 Sobic003G349300 Sobic009G135600--Sobic003G349300 Sobic009G135600--Sobic009G146100 Sobic001G433400 Sobic001G433400 Sobic009G135600--Sobic001G433400 Sobic002G385900 Sobic002G385900 Sobic009G135600--Sobic002G385900 Sobic009G135600--Sobic001G388200 Sobic009G135600--Sobic002G400000 Sobic001G294900 Sobic001G294900 Sobic009G135600--Sobic001G294900 Sobic009G135600--Sobic001G054200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.