Gene annotation
Transcriptome id Sobic.009G135600.1
Synonym Sb09g020150
Functional annotation UBA/TS-N domain containing protein, expressed
UniProt C5YXS8
Pfam -
Panther DB PTHR35294 PTHR35294:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G26920 : Ubiquitin-associated/translation elongation factor EF1B protein
RAP-DB (Rice) LOC_Os05g33850.1 : UBA/TS-N domain containing protein, expressed
MaizeGDB (Corn) Zm00025a037455 , Zm00025a043673
Brachypodium KQK06294 , PNT71274
Barley HORVU0Hr1G000600.1 , HORVU0Hr1G000600.2 , HORVU0Hr1G000600.3
Wheat -
Populus -


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cDNA sequences
Sobic.009G135600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
2 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
3 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
4 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
5 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
6 Sobic.001G388200 ELMO/CED-12 family protein, putative, expressed -
7 Sobic.002G400000 MBTB14 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
8 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
9 Sobic.001G054200 green ripe-like, putative, expressed -
10 Sobic.009G174900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
11 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
12 Sobic.001G512400 expressed protein -
13 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
14 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
15 Sobic.003G337000 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
16 Sobic.001G007200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
17 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
18 Sobic.007G045600 MSP domain containing protein, expressed -
19 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
20 Sobic.002G045300 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A


Gene co-expression network
sample Sobic009G135600 Sobic009G135600 Sobic001G461900 Sobic001G461900 Sobic009G135600--Sobic001G461900 Sobic003G349300 Sobic003G349300 Sobic009G135600--Sobic003G349300 Sobic009G146100 Sobic009G146100 Sobic009G135600--Sobic009G146100 Sobic001G433400 Sobic001G433400 Sobic009G135600--Sobic001G433400 Sobic002G385900 Sobic002G385900 Sobic009G135600--Sobic002G385900 Sobic001G388200 Sobic001G388200 Sobic009G135600--Sobic001G388200 Sobic002G400000 Sobic002G400000 Sobic009G135600--Sobic002G400000 Sobic001G294900 Sobic001G294900 Sobic009G135600--Sobic001G294900 Sobic001G054200 Sobic001G054200 Sobic009G135600--Sobic001G054200 Sobic001G461900--Sobic009G135600 Sobic007G045600 Sobic007G045600 Sobic001G461900--Sobic007G045600 Sobic001G461900--Sobic009G146100 Sobic004G327300 Sobic004G327300 Sobic001G461900--Sobic004G327300 Sobic007G142500 Sobic007G142500 Sobic001G461900--Sobic007G142500 Sobic007G168600 Sobic007G168600 Sobic001G461900--Sobic007G168600 Sobic004G086600 Sobic004G086600 Sobic001G461900--Sobic004G086600 Sobic004G335000 Sobic004G335000 Sobic001G461900--Sobic004G335000 Sobic007G096700 Sobic007G096700 Sobic001G461900--Sobic007G096700 Sobic010G205300 Sobic010G205300 Sobic003G349300--Sobic010G205300 Sobic003G349300--Sobic001G294900 Sobic003G349300--Sobic009G135600 Sobic003G349300--Sobic001G388200 Sobic004G181900 Sobic004G181900 Sobic003G349300--Sobic004G181900 Sobic009G192000 Sobic009G192000 Sobic003G349300--Sobic009G192000 Sobic001G283200 Sobic001G283200 Sobic003G349300--Sobic001G283200 Sobic003G261400 Sobic003G261400 Sobic003G349300--Sobic003G261400 Sobic003G349300--Sobic007G168600 Sobic010G253800 Sobic010G253800 Sobic009G146100--Sobic010G253800 Sobic003G253000 Sobic003G253000 Sobic009G146100--Sobic003G253000 Sobic001G415500 Sobic001G415500 Sobic009G146100--Sobic001G415500 Sobic009G146100--Sobic001G433400 Sobic009G146100--Sobic009G135600 Sobic008G161800 Sobic008G161800 Sobic009G146100--Sobic008G161800 Sobic007G186300 Sobic007G186300 Sobic009G146100--Sobic007G186300 Sobic009G146100--Sobic001G461900 Sobic009G146100--Sobic007G045600 Sobic002G045300 Sobic002G045300 Sobic001G433400--Sobic002G045300 Sobic001G433400--Sobic002G400000 Sobic003G367451 Sobic003G367451 Sobic001G433400--Sobic003G367451 Sobic001G433400--Sobic009G146100 Sobic001G433400--Sobic009G135600 Sobic001G433400--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic001G433400--Sobic003G220600 Sobic001G433400--Sobic004G327300 Sobic001G433400--Sobic007G186300 Sobic002G385900--Sobic009G135600 Sobic001G057800 Sobic001G057800 Sobic002G385900--Sobic001G057800 Sobic002G385900--Sobic001G461900 Sobic003G099100 Sobic003G099100 Sobic002G385900--Sobic003G099100 Sobic002G166900 Sobic002G166900 Sobic002G385900--Sobic002G166900 Sobic010G042100 Sobic010G042100 Sobic002G385900--Sobic010G042100 Sobic001G323000 Sobic001G323000 Sobic002G385900--Sobic001G323000 Sobic009G207000 Sobic009G207000 Sobic002G385900--Sobic009G207000 Sobic006G281800 Sobic006G281800 Sobic002G385900--Sobic006G281800 Sobic001G388200--Sobic003G349300 Sobic006G232200 Sobic006G232200 Sobic001G388200--Sobic006G232200 Sobic001G388200--Sobic009G135600 Sobic010G083700 Sobic010G083700 Sobic001G388200--Sobic010G083700 Sobic002G281300 Sobic002G281300 Sobic001G388200--Sobic002G281300 Sobic001G388200--Sobic001G054200 Sobic010G000900 Sobic010G000900 Sobic001G388200--Sobic010G000900 Sobic001G314500 Sobic001G314500 Sobic001G388200--Sobic001G314500 Sobic001G388200--Sobic003G261400 Sobic002G400000--Sobic007G168600 Sobic003G077900 Sobic003G077900 Sobic002G400000--Sobic003G077900 Sobic009G198500 Sobic009G198500 Sobic002G400000--Sobic009G198500 Sobic004G130900 Sobic004G130900 Sobic002G400000--Sobic004G130900 Sobic002G400000--Sobic001G433400 Sobic001G395400 Sobic001G395400 Sobic002G400000--Sobic001G395400 Sobic002G400000--Sobic004G327300 Sobic009G004600 Sobic009G004600 Sobic002G400000--Sobic009G004600 Sobic002G400000--Sobic010G000900 Sobic008G137600 Sobic008G137600 Sobic001G294900--Sobic008G137600 Sobic001G294900--Sobic003G349300 Sobic006G225300 Sobic006G225300 Sobic001G294900--Sobic006G225300 Sobic001G439600 Sobic001G439600 Sobic001G294900--Sobic001G439600 Sobic006G183000 Sobic006G183000 Sobic001G294900--Sobic006G183000 Sobic002G129000 Sobic002G129000 Sobic001G294900--Sobic002G129000 Sobic001G458700 Sobic001G458700 Sobic001G294900--Sobic001G458700 Sobic001G294900--Sobic009G135600 Sobic006G109700 Sobic006G109700 Sobic001G294900--Sobic006G109700 Sobic001G054200--Sobic010G083700 Sobic006G263900 Sobic006G263900 Sobic001G054200--Sobic006G263900 Sobic006G212100 Sobic006G212100 Sobic001G054200--Sobic006G212100 Sobic001G054200--Sobic007G186300 Sobic004G293700 Sobic004G293700 Sobic001G054200--Sobic004G293700 Sobic009G246950 Sobic009G246950 Sobic001G054200--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic001G054200--Sobic004G079100 Sobic001G054200--Sobic006G232200 Sobic003G115800 Sobic003G115800 Sobic001G054200--Sobic003G115800
Octagon: transcription factors


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