Gene annotation
Transcriptome id Sobic.001G461900.1
Synonym Sb01g043350
Functional annotation vesicle transport protein GOT1B, putative, expressed
UniProt C5WTP9
Pfam PF04178
Panther DB PTHR21493
NCBI CDD KOG1743; Ferric reductase-like proteins
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport


Orthologs (automatic annotation)
TAIR AT3G49420 : Got1/Sft2-like vescicle transport protein family
RAP-DB (Rice) LOC_Os03g11100.1 : vesicle transport protein GOT1B, putative, expressed
MaizeGDB (Corn) Zm00025a053118 , Zm00025a001090
Brachypodium KQK22999
Barley HORVU4Hr1G069200.1 , HORVU4Hr1G069200.9 , HORVU4Hr1G069200.8 , HORVU4Hr1G069200.7 , HORVU4Hr1G069200.2 , HORVU4Hr1G069200.5 , HORVU4Hr1G069200.4 , HORVU4Hr1G069200.10 , HORVU4Hr1G069200.3
Wheat TraesCS4D02G252900 , TraesCS4A02G051600 , TraesCS4B02G252600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
2 Sobic.007G045600 MSP domain containing protein, expressed -
3 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
4 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
5 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
6 Sobic.007G168600 vesicle-associated membrane protein 727, putative, expressed K08511: vesicle-associated membrane protein 72
7 Sobic.004G086600 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
8 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
9 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
10 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
11 Sobic.003G248600 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
12 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
13 Sobic.001G433400 Zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.007G019100 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
15 Sobic.002G385900 DCN1, putative, expressed K17822: DCN1-like protein 1/2
16 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
17 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
18 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4
19 Sobic.009G225000 transmembrane protein 93, putative, expressed -
20 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2


Gene co-expression network
sample Sobic001G461900 Sobic001G461900 Sobic009G135600 Sobic009G135600 Sobic001G461900--Sobic009G135600 Sobic007G045600 Sobic007G045600 Sobic001G461900--Sobic007G045600 Sobic009G146100 Sobic009G146100 Sobic001G461900--Sobic009G146100 Sobic004G327300 Sobic004G327300 Sobic001G461900--Sobic004G327300 Sobic007G142500 Sobic007G142500 Sobic001G461900--Sobic007G142500 Sobic007G168600 Sobic007G168600 Sobic001G461900--Sobic007G168600 Sobic004G086600 Sobic004G086600 Sobic001G461900--Sobic004G086600 Sobic004G335000 Sobic004G335000 Sobic001G461900--Sobic004G335000 Sobic007G096700 Sobic007G096700 Sobic001G461900--Sobic007G096700 Sobic009G135600--Sobic001G461900 Sobic003G349300 Sobic003G349300 Sobic009G135600--Sobic003G349300 Sobic009G135600--Sobic009G146100 Sobic001G433400 Sobic001G433400 Sobic009G135600--Sobic001G433400 Sobic002G385900 Sobic002G385900 Sobic009G135600--Sobic002G385900 Sobic001G388200 Sobic001G388200 Sobic009G135600--Sobic001G388200 Sobic002G400000 Sobic002G400000 Sobic009G135600--Sobic002G400000 Sobic001G294900 Sobic001G294900 Sobic009G135600--Sobic001G294900 Sobic001G054200 Sobic001G054200 Sobic009G135600--Sobic001G054200 Sobic007G114200 Sobic007G114200 Sobic007G045600--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic007G045600--Sobic007G019100 Sobic003G124800 Sobic003G124800 Sobic007G045600--Sobic003G124800 Sobic006G232200 Sobic006G232200 Sobic007G045600--Sobic006G232200 Sobic003G261400 Sobic003G261400 Sobic007G045600--Sobic003G261400 Sobic007G045600--Sobic007G142500 Sobic007G045600--Sobic004G086600 Sobic007G045600--Sobic001G461900 Sobic007G118000 Sobic007G118000 Sobic007G045600--Sobic007G118000 Sobic010G253800 Sobic010G253800 Sobic009G146100--Sobic010G253800 Sobic003G253000 Sobic003G253000 Sobic009G146100--Sobic003G253000 Sobic001G415500 Sobic001G415500 Sobic009G146100--Sobic001G415500 Sobic009G146100--Sobic001G433400 Sobic009G146100--Sobic009G135600 Sobic008G161800 Sobic008G161800 Sobic009G146100--Sobic008G161800 Sobic007G186300 Sobic007G186300 Sobic009G146100--Sobic007G186300 Sobic009G146100--Sobic001G461900 Sobic009G146100--Sobic007G045600 Sobic003G367451 Sobic003G367451 Sobic004G327300--Sobic003G367451 Sobic001G005900 Sobic001G005900 Sobic004G327300--Sobic001G005900 Sobic004G327300--Sobic007G096700 Sobic004G327300--Sobic002G400000 Sobic004G130900 Sobic004G130900 Sobic004G327300--Sobic004G130900 Sobic004G327300--Sobic001G461900 Sobic009G174900 Sobic009G174900 Sobic004G327300--Sobic009G174900 Sobic009G198500 Sobic009G198500 Sobic004G327300--Sobic009G198500 Sobic004G327300--Sobic007G114200 Sobic007G142500--Sobic007G045600 Sobic001G458700 Sobic001G458700 Sobic007G142500--Sobic001G458700 Sobic007G142500--Sobic001G461900 Sobic007G142500--Sobic003G261400 Sobic003G323600 Sobic003G323600 Sobic007G142500--Sobic003G323600 Sobic007G176200 Sobic007G176200 Sobic007G142500--Sobic007G176200 Sobic009G088100 Sobic009G088100 Sobic007G142500--Sobic009G088100 Sobic007G142500--Sobic004G335000 Sobic002G281300 Sobic002G281300 Sobic007G142500--Sobic002G281300 Sobic007G168600--Sobic002G400000 Sobic007G168600--Sobic009G198500 Sobic007G168600--Sobic004G086600 Sobic001G502200 Sobic001G502200 Sobic007G168600--Sobic001G502200 Sobic003G077900 Sobic003G077900 Sobic007G168600--Sobic003G077900 Sobic010G205300 Sobic010G205300 Sobic007G168600--Sobic010G205300 Sobic007G168600--Sobic003G124800 Sobic007G168600--Sobic001G461900 Sobic001G314500 Sobic001G314500 Sobic007G168600--Sobic001G314500 Sobic004G086600--Sobic007G168600 Sobic004G086600--Sobic007G045600 Sobic001G007200 Sobic001G007200 Sobic004G086600--Sobic001G007200 Sobic004G086600--Sobic001G502200 Sobic004G086600--Sobic006G232200 Sobic004G086600--Sobic001G461900 Sobic004G086600--Sobic003G124800 Sobic004G086600--Sobic001G415500 Sobic003G015900 Sobic003G015900 Sobic004G086600--Sobic003G015900 Sobic002G428200 Sobic002G428200 Sobic004G335000--Sobic002G428200 Sobic004G335000--Sobic007G176200 Sobic001G010700 Sobic001G010700 Sobic004G335000--Sobic001G010700 Sobic002G257400 Sobic002G257400 Sobic004G335000--Sobic002G257400 Sobic006G252200 Sobic006G252200 Sobic004G335000--Sobic006G252200 Sobic001G236300 Sobic001G236300 Sobic004G335000--Sobic001G236300 Sobic004G335000--Sobic001G461900 Sobic001G058100 Sobic001G058100 Sobic004G335000--Sobic001G058100 Sobic004G335000--Sobic007G045600 Sobic007G096700--Sobic009G198500 Sobic007G096700--Sobic004G327300 Sobic009G122100 Sobic009G122100 Sobic007G096700--Sobic009G122100 Sobic001G501200 Sobic001G501200 Sobic007G096700--Sobic001G501200 Sobic007G096700--Sobic001G005900 Sobic007G096700--Sobic002G400000 Sobic007G096700--Sobic004G130900 Sobic001G175800 Sobic001G175800 Sobic007G096700--Sobic001G175800 Sobic004G300900 Sobic004G300900 Sobic007G096700--Sobic004G300900
Octagon: transcription factors


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