Gene annotation
Transcriptome id Sobic.007G045600.1
Synonym (AT)VAP, Sb07g003760, VAP27, VAP27-1, VAP
Functional annotation MSP domain containing protein, expressed
UniProt C5YH01
Pfam PF00635
Panther DB PTHR10809 PTHR10809:SF50
NCBI CDD KOG0439; VAMP-associated protein involved in inositol metabolism
KEGG Orthology -
Gene Ontology GO:0005789; endoplasmic reticulum membrane


Orthologs (automatic annotation)
TAIR AT3G60600 : vesicle associated protein
RAP-DB (Rice) LOC_Os08g06020.1 : MSP domain containing protein, expressed
MaizeGDB (Corn) Zm00025a030092
Brachypodium KQJ95341
Barley HORVU7Hr1G071270.2
Wheat TraesCS7A02G300700 , TraesCS7D02G296400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.007G045600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
2 Sobic.007G019100 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
3 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
4 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
5 Sobic.003G261400 DUF292 domain containing protein, expressed -
6 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
7 Sobic.004G086600 26S protease regulatory subunit, putative, expressed K03066: PSMC5, 26S proteasome regulatory subunit T6
8 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
9 Sobic.007G118000 double-stranded RNA binding motif containing protein, expressed -
10 Sobic.001G502200 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
11 Sobic.003G323600 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
12 Sobic.003G248600 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
13 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
14 Sobic.008G073300 clathrin adaptor complex small chain domain containing protein, expressed K11827: AP-2 complex subunit sigma-1
15 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
16 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
17 Sobic.003G220600 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
18 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
19 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
20 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6


Gene co-expression network
sample Sobic007G045600 Sobic007G045600 Sobic007G114200 Sobic007G114200 Sobic007G045600--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic007G045600--Sobic007G019100 Sobic003G124800 Sobic003G124800 Sobic007G045600--Sobic003G124800 Sobic006G232200 Sobic006G232200 Sobic007G045600--Sobic006G232200 Sobic003G261400 Sobic003G261400 Sobic007G045600--Sobic003G261400 Sobic007G142500 Sobic007G142500 Sobic007G045600--Sobic007G142500 Sobic004G086600 Sobic004G086600 Sobic007G045600--Sobic004G086600 Sobic001G461900 Sobic001G461900 Sobic007G045600--Sobic001G461900 Sobic007G118000 Sobic007G118000 Sobic007G045600--Sobic007G118000 Sobic007G114200--Sobic007G045600 Sobic003G367451 Sobic003G367451 Sobic007G114200--Sobic003G367451 Sobic001G236300 Sobic001G236300 Sobic007G114200--Sobic001G236300 Sobic009G001400 Sobic009G001400 Sobic007G114200--Sobic009G001400 Sobic002G428200 Sobic002G428200 Sobic007G114200--Sobic002G428200 Sobic006G252200 Sobic006G252200 Sobic007G114200--Sobic006G252200 Sobic002G214900 Sobic002G214900 Sobic007G114200--Sobic002G214900 Sobic004G327300 Sobic004G327300 Sobic007G114200--Sobic004G327300 Sobic004G138800 Sobic004G138800 Sobic007G114200--Sobic004G138800 Sobic007G019100--Sobic007G045600 Sobic001G132100 Sobic001G132100 Sobic007G019100--Sobic001G132100 Sobic003G323600 Sobic003G323600 Sobic007G019100--Sobic003G323600 Sobic009G119900 Sobic009G119900 Sobic007G019100--Sobic009G119900 Sobic001G048832 Sobic001G048832 Sobic007G019100--Sobic001G048832 Sobic004G170400 Sobic004G170400 Sobic007G019100--Sobic004G170400 Sobic007G019100--Sobic007G114200 Sobic001G074700 Sobic001G074700 Sobic007G019100--Sobic001G074700 Sobic001G342200 Sobic001G342200 Sobic007G019100--Sobic001G342200 Sobic009G198500 Sobic009G198500 Sobic003G124800--Sobic009G198500 Sobic001G439600 Sobic001G439600 Sobic003G124800--Sobic001G439600 Sobic003G124800--Sobic006G232200 Sobic001G502200 Sobic001G502200 Sobic003G124800--Sobic001G502200 Sobic003G124800--Sobic007G045600 Sobic001G529000 Sobic001G529000 Sobic003G124800--Sobic001G529000 Sobic007G168600 Sobic007G168600 Sobic003G124800--Sobic007G168600 Sobic006G150600 Sobic006G150600 Sobic003G124800--Sobic006G150600 Sobic004G066800 Sobic004G066800 Sobic003G124800--Sobic004G066800 Sobic006G232200--Sobic003G124800 Sobic006G232200--Sobic007G045600 Sobic001G143300 Sobic001G143300 Sobic006G232200--Sobic001G143300 Sobic006G232200--Sobic009G198500 Sobic004G130100 Sobic004G130100 Sobic006G232200--Sobic004G130100 Sobic006G232200--Sobic003G323600 Sobic001G054200 Sobic001G054200 Sobic006G232200--Sobic001G054200 Sobic008G161800 Sobic008G161800 Sobic006G232200--Sobic008G161800 Sobic001G388200 Sobic001G388200 Sobic006G232200--Sobic001G388200 Sobic001G283200 Sobic001G283200 Sobic003G261400--Sobic001G283200 Sobic002G281300 Sobic002G281300 Sobic003G261400--Sobic002G281300 Sobic003G261500 Sobic003G261500 Sobic003G261400--Sobic003G261500 Sobic003G261400--Sobic007G045600 Sobic001G458700 Sobic001G458700 Sobic003G261400--Sobic001G458700 Sobic004G130900 Sobic004G130900 Sobic003G261400--Sobic004G130900 Sobic003G261400--Sobic003G124800 Sobic001G051200 Sobic001G051200 Sobic003G261400--Sobic001G051200 Sobic010G000900 Sobic010G000900 Sobic003G261400--Sobic010G000900 Sobic007G142500--Sobic007G045600 Sobic007G142500--Sobic001G458700 Sobic007G142500--Sobic001G461900 Sobic007G142500--Sobic003G261400 Sobic007G142500--Sobic003G323600 Sobic007G176200 Sobic007G176200 Sobic007G142500--Sobic007G176200 Sobic009G088100 Sobic009G088100 Sobic007G142500--Sobic009G088100 Sobic004G335000 Sobic004G335000 Sobic007G142500--Sobic004G335000 Sobic007G142500--Sobic002G281300 Sobic004G086600--Sobic007G168600 Sobic004G086600--Sobic007G045600 Sobic001G007200 Sobic001G007200 Sobic004G086600--Sobic001G007200 Sobic004G086600--Sobic001G502200 Sobic004G086600--Sobic006G232200 Sobic004G086600--Sobic001G461900 Sobic004G086600--Sobic003G124800 Sobic001G415500 Sobic001G415500 Sobic004G086600--Sobic001G415500 Sobic003G015900 Sobic003G015900 Sobic004G086600--Sobic003G015900 Sobic009G135600 Sobic009G135600 Sobic001G461900--Sobic009G135600 Sobic001G461900--Sobic007G045600 Sobic009G146100 Sobic009G146100 Sobic001G461900--Sobic009G146100 Sobic001G461900--Sobic004G327300 Sobic001G461900--Sobic007G142500 Sobic001G461900--Sobic007G168600 Sobic001G461900--Sobic004G086600 Sobic001G461900--Sobic004G335000 Sobic007G096700 Sobic007G096700 Sobic001G461900--Sobic007G096700 Sobic007G118000--Sobic007G045600 Sobic001G033500 Sobic001G033500 Sobic007G118000--Sobic001G033500 Sobic001G402300 Sobic001G402300 Sobic007G118000--Sobic001G402300 Sobic003G374000 Sobic003G374000 Sobic007G118000--Sobic003G374000 Sobic004G072800 Sobic004G072800 Sobic007G118000--Sobic004G072800 Sobic007G118000--Sobic002G281300 Sobic001G067900 Sobic001G067900 Sobic007G118000--Sobic001G067900 Sobic004G141700 Sobic004G141700 Sobic007G118000--Sobic004G141700 Sobic001G323300 Sobic001G323300 Sobic007G118000--Sobic001G323300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.