Gene annotation
Transcriptome id Sobic.001G236300.1
Synonym Sb01g020910
Functional annotation cell division control protein 48 homolog E, putative, expressed
UniProt C5X0G5
Pfam PF02933 PF07724 PF05496 PF02359
Panther DB PTHR23077 PTHR23077:SF82
NCBI CDD -
KEGG Orthology K13525; VCP, transitional endoplasmic reticulum ATPase
Gene Ontology GO:0005524; ATP binding GO:0009378four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT5G03340 : ATPase, AAA-type, CDC48 protein
RAP-DB (Rice) LOC_Os10g30580.1 : cell division control protein 48 homolog E, putative, expressed
MaizeGDB (Corn) Zm00025a006583 , Zm00025a049503 , Zm00025a000692 , Zm00025a027296 , Zm00025a017720 , Zm00025a006788 , Zm00025a053428
Brachypodium KQK23612 , KQK23611
Barley HORVU4Hr1G071960.1 , HORVU4Hr1G071960.3 , HORVU4Hr1G071960.2 , HORVU4Hr1G071960.5 , HORVU4Hr1G071960.4 , HORVU4Hr1G071960.7 , HORVU4Hr1G071960.6 , HORVU4Hr1G071960.9 , HORVU4Hr1G071960.8 , HORVU1Hr1G049910.4 , HORVU1Hr1G049910.2 , HORVU1Hr1G049910.3 , HORVU1Hr1G049910.1 , HORVU4Hr1G071960.10 , HORVU4Hr1G072010.4 , HORVU4Hr1G072010.5 , HORVU4Hr1G072010.6 , HORVU4Hr1G072010.7 , HORVU4Hr1G072010.1 , HORVU4Hr1G072010.2 , HORVU4Hr1G072010.3 , HORVU0Hr1G038060.3 , HORVU0Hr1G038060.2 , HORVU0Hr1G038060.1
Wheat TraesCS4D02G267800 , TraesCS4D02G267800 , TraesCS4A02G035500 , TraesCS4B02G268200 , TraesCS4A02G035700 , TraesCS4A02G035700 , TraesCS4A02G035700 , TraesCS4B02G268400 , TraesCS4D02G267600 , TraesCS4D02G267600 , TraesCS1B02G192400
Populus PNS96293 , PNS98694 , PNS98693 , PNT31281 , PNT31282 , PNT31283


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cDNA sequences
Sobic.001G236300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
2 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
3 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
4 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
5 Sobic.001G058100 thioredoxin, putative, expressed -
6 Sobic.001G132100 expressed protein -
7 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
8 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
9 Sobic.007G045600 MSP domain containing protein, expressed -
10 Sobic.003G104700 Rer1 protein, putative, expressed -
11 Sobic.004G327300 TMS membrane protein/tumour differentially expressed protein, putative, expressed -
12 Sobic.007G078100 UPF0041 domain containing protein, putative, expressed -
13 Sobic.004G130900 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
14 Sobic.007G076300 26S proteasome non-ATPase regulatory subunit 8, putative, expressed K03031: PSMD8, 26S proteasome regulatory subunit N12
15 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
16 Sobic.004G276100 expressed protein -
17 Sobic.003G330500 peptidase, T1 family, putative, expressed -
18 Sobic.001G048832 - -
19 Sobic.003G323600 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
20 Sobic.002G153500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A


Gene co-expression network
sample Sobic001G236300 Sobic001G236300 Sobic003G367451 Sobic003G367451 Sobic001G236300--Sobic003G367451 Sobic004G224900 Sobic004G224900 Sobic001G236300--Sobic004G224900 Sobic007G114200 Sobic007G114200 Sobic001G236300--Sobic007G114200 Sobic004G272800 Sobic004G272800 Sobic001G236300--Sobic004G272800 Sobic001G058100 Sobic001G058100 Sobic001G236300--Sobic001G058100 Sobic001G132100 Sobic001G132100 Sobic001G236300--Sobic001G132100 Sobic006G252200 Sobic006G252200 Sobic001G236300--Sobic006G252200 Sobic004G335000 Sobic004G335000 Sobic001G236300--Sobic004G335000 Sobic007G045600 Sobic007G045600 Sobic001G236300--Sobic007G045600 Sobic004G327300 Sobic004G327300 Sobic003G367451--Sobic004G327300 Sobic003G367451--Sobic001G236300 Sobic003G367451--Sobic007G114200 Sobic001G433400 Sobic001G433400 Sobic003G367451--Sobic001G433400 Sobic003G367451--Sobic004G272800 Sobic002G083266 Sobic002G083266 Sobic003G367451--Sobic002G083266 Sobic004G130900 Sobic004G130900 Sobic003G367451--Sobic004G130900 Sobic003G253000 Sobic003G253000 Sobic003G367451--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic003G367451--Sobic003G220600 Sobic003G330500 Sobic003G330500 Sobic004G224900--Sobic003G330500 Sobic004G224900--Sobic006G252200 Sobic007G176200 Sobic007G176200 Sobic004G224900--Sobic007G176200 Sobic004G138800 Sobic004G138800 Sobic004G224900--Sobic004G138800 Sobic007G076300 Sobic007G076300 Sobic004G224900--Sobic007G076300 Sobic001G481700 Sobic001G481700 Sobic004G224900--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic004G224900--Sobic001G502200 Sobic001G458700 Sobic001G458700 Sobic004G224900--Sobic001G458700 Sobic004G224900--Sobic001G236300 Sobic007G114200--Sobic007G045600 Sobic007G114200--Sobic003G367451 Sobic007G114200--Sobic001G236300 Sobic009G001400 Sobic009G001400 Sobic007G114200--Sobic009G001400 Sobic002G428200 Sobic002G428200 Sobic007G114200--Sobic002G428200 Sobic007G114200--Sobic006G252200 Sobic002G214900 Sobic002G214900 Sobic007G114200--Sobic002G214900 Sobic007G114200--Sobic004G327300 Sobic007G114200--Sobic004G138800 Sobic002G267500 Sobic002G267500 Sobic004G272800--Sobic002G267500 Sobic001G281400 Sobic001G281400 Sobic004G272800--Sobic001G281400 Sobic004G272800--Sobic003G253000 Sobic001G048832 Sobic001G048832 Sobic004G272800--Sobic001G048832 Sobic002G190900 Sobic002G190900 Sobic004G272800--Sobic002G190900 Sobic002G345300 Sobic002G345300 Sobic004G272800--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic004G272800--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic004G272800--Sobic010G041600 Sobic005G188100 Sobic005G188100 Sobic004G272800--Sobic005G188100 Sobic001G058100--Sobic001G236300 Sobic001G058100--Sobic004G335000 Sobic002G257400 Sobic002G257400 Sobic001G058100--Sobic002G257400 Sobic001G058100--Sobic006G252200 Sobic010G044200 Sobic010G044200 Sobic001G058100--Sobic010G044200 Sobic001G289400 Sobic001G289400 Sobic001G058100--Sobic001G289400 Sobic003G104700 Sobic003G104700 Sobic001G058100--Sobic003G104700 Sobic006G220900 Sobic006G220900 Sobic001G058100--Sobic006G220900 Sobic001G058100--Sobic002G083266 Sobic001G132100--Sobic001G048832 Sobic010G154700 Sobic010G154700 Sobic001G132100--Sobic010G154700 Sobic001G132100--Sobic002G190900 Sobic001G132100--Sobic005G188100 Sobic007G051000 Sobic007G051000 Sobic001G132100--Sobic007G051000 Sobic002G398901 Sobic002G398901 Sobic001G132100--Sobic002G398901 Sobic009G119900 Sobic009G119900 Sobic001G132100--Sobic009G119900 Sobic010G018400 Sobic010G018400 Sobic001G132100--Sobic010G018400 Sobic001G132100--Sobic004G272800 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic001G010700 Sobic001G010700 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic006G252200--Sobic002G428200 Sobic006G252200--Sobic004G138800 Sobic001G283200 Sobic001G283200 Sobic006G252200--Sobic001G283200 Sobic001G096100 Sobic001G096100 Sobic006G252200--Sobic001G096100 Sobic004G335000--Sobic002G428200 Sobic004G335000--Sobic007G176200 Sobic004G335000--Sobic001G010700 Sobic004G335000--Sobic002G257400 Sobic004G335000--Sobic006G252200 Sobic004G335000--Sobic001G236300 Sobic001G461900 Sobic001G461900 Sobic004G335000--Sobic001G461900 Sobic004G335000--Sobic001G058100 Sobic004G335000--Sobic007G045600 Sobic007G045600--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic007G045600--Sobic007G019100 Sobic003G124800 Sobic003G124800 Sobic007G045600--Sobic003G124800 Sobic006G232200 Sobic006G232200 Sobic007G045600--Sobic006G232200 Sobic003G261400 Sobic003G261400 Sobic007G045600--Sobic003G261400 Sobic007G142500 Sobic007G142500 Sobic007G045600--Sobic007G142500 Sobic004G086600 Sobic004G086600 Sobic007G045600--Sobic004G086600 Sobic007G045600--Sobic001G461900 Sobic007G118000 Sobic007G118000 Sobic007G045600--Sobic007G118000
Octagon: transcription factors


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