Gene annotation
Transcriptome id Sobic.003G323600.1
Synonym Sb03g036990
Functional annotation translation initiation factor SUI1, putative, expressed
UniProt C5XME1
Pfam PF01253
Panther DB PTHR10388 PTHR10388:SF19
NCBI CDD KOG1770; Translation initiation factor 1 (eIF-1/SUI1)
KEGG Orthology K03113; EIF1, translation initiation factor 1
Gene Ontology GO:0006413; translational initiation GO:0003743translation initiation factor activity


Orthologs (automatic annotation)
TAIR AT1G54290 : Translation initiation factor SUI1 family protein
RAP-DB (Rice) LOC_Os01g58220.2 : translation initiation factor SUI1, putative, expressed
MaizeGDB (Corn) Zm00025a044115 , Zm00025a027223
Brachypodium KQK05570 , KQK10150 , KQK10151
Barley HORVU3Hr1G077960.1 , HORVU3Hr1G077960.2 , HORVU3Hr1G077960.3 , HORVU3Hr1G077960.4
Wheat TraesCS3A02G327200 , TraesCS3D02G320600 , TraesCS3B02G356600 , TraesCS1A02G316900 , TraesCS1D02G316900 , TraesCS1B02G329300
Populus -


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cDNA sequences
Sobic.003G323600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G045600 MSP domain containing protein, expressed -
2 Sobic.007G019100 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
3 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
4 Sobic.001G459500 leucine rich repeat containing protein, expressed -
5 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
6 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
7 Sobic.001G132100 expressed protein -
8 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
9 Sobic.001G048832 - -
10 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
11 Sobic.003G398300 mitochondrial import inner membrane translocase subunit Tim16, putative, expressed K17805: PAM16, mitochondrial import inner membrane translocase subunit TIM16
12 Sobic.010G154700 - -
13 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
14 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
15 Sobic.001G058100 thioredoxin, putative, expressed -
16 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
17 Sobic.001G143300 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
18 Sobic.007G096700 POEI30 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
19 Sobic.002G153500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
20 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein


Gene co-expression network
sample Sobic003G323600 Sobic003G323600 Sobic007G045600 Sobic007G045600 Sobic003G323600--Sobic007G045600 Sobic007G019100 Sobic007G019100 Sobic003G323600--Sobic007G019100 Sobic006G232200 Sobic006G232200 Sobic003G323600--Sobic006G232200 Sobic001G459500 Sobic001G459500 Sobic003G323600--Sobic001G459500 Sobic003G367451 Sobic003G367451 Sobic003G323600--Sobic003G367451 Sobic007G142500 Sobic007G142500 Sobic003G323600--Sobic007G142500 Sobic001G132100 Sobic001G132100 Sobic003G323600--Sobic001G132100 Sobic001G236300 Sobic001G236300 Sobic003G323600--Sobic001G236300 Sobic001G048832 Sobic001G048832 Sobic003G323600--Sobic001G048832 Sobic007G114200 Sobic007G114200 Sobic007G045600--Sobic007G114200 Sobic007G045600--Sobic007G019100 Sobic003G124800 Sobic003G124800 Sobic007G045600--Sobic003G124800 Sobic007G045600--Sobic006G232200 Sobic003G261400 Sobic003G261400 Sobic007G045600--Sobic003G261400 Sobic007G045600--Sobic007G142500 Sobic004G086600 Sobic004G086600 Sobic007G045600--Sobic004G086600 Sobic001G461900 Sobic001G461900 Sobic007G045600--Sobic001G461900 Sobic007G118000 Sobic007G118000 Sobic007G045600--Sobic007G118000 Sobic007G019100--Sobic007G045600 Sobic007G019100--Sobic001G132100 Sobic007G019100--Sobic003G323600 Sobic009G119900 Sobic009G119900 Sobic007G019100--Sobic009G119900 Sobic007G019100--Sobic001G048832 Sobic004G170400 Sobic004G170400 Sobic007G019100--Sobic004G170400 Sobic007G019100--Sobic007G114200 Sobic001G074700 Sobic001G074700 Sobic007G019100--Sobic001G074700 Sobic001G342200 Sobic001G342200 Sobic007G019100--Sobic001G342200 Sobic006G232200--Sobic003G124800 Sobic006G232200--Sobic007G045600 Sobic001G143300 Sobic001G143300 Sobic006G232200--Sobic001G143300 Sobic009G198500 Sobic009G198500 Sobic006G232200--Sobic009G198500 Sobic004G130100 Sobic004G130100 Sobic006G232200--Sobic004G130100 Sobic006G232200--Sobic003G323600 Sobic001G054200 Sobic001G054200 Sobic006G232200--Sobic001G054200 Sobic008G161800 Sobic008G161800 Sobic006G232200--Sobic008G161800 Sobic001G388200 Sobic001G388200 Sobic006G232200--Sobic001G388200 Sobic001G459500--Sobic003G323600 Sobic001G459500--Sobic007G045600 Sobic010G188200 Sobic010G188200 Sobic001G459500--Sobic010G188200 Sobic001G459500--Sobic007G142500 Sobic003G398300 Sobic003G398300 Sobic001G459500--Sobic003G398300 Sobic001G459500--Sobic006G232200 Sobic001G459500--Sobic003G367451 Sobic001G459500--Sobic001G461900 Sobic004G335000 Sobic004G335000 Sobic001G459500--Sobic004G335000 Sobic004G327300 Sobic004G327300 Sobic003G367451--Sobic004G327300 Sobic003G367451--Sobic001G236300 Sobic003G367451--Sobic007G114200 Sobic001G433400 Sobic001G433400 Sobic003G367451--Sobic001G433400 Sobic004G272800 Sobic004G272800 Sobic003G367451--Sobic004G272800 Sobic002G083266 Sobic002G083266 Sobic003G367451--Sobic002G083266 Sobic004G130900 Sobic004G130900 Sobic003G367451--Sobic004G130900 Sobic003G253000 Sobic003G253000 Sobic003G367451--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic003G367451--Sobic003G220600 Sobic007G142500--Sobic007G045600 Sobic001G458700 Sobic001G458700 Sobic007G142500--Sobic001G458700 Sobic007G142500--Sobic001G461900 Sobic007G142500--Sobic003G261400 Sobic007G142500--Sobic003G323600 Sobic007G176200 Sobic007G176200 Sobic007G142500--Sobic007G176200 Sobic009G088100 Sobic009G088100 Sobic007G142500--Sobic009G088100 Sobic007G142500--Sobic004G335000 Sobic002G281300 Sobic002G281300 Sobic007G142500--Sobic002G281300 Sobic001G132100--Sobic001G048832 Sobic010G154700 Sobic010G154700 Sobic001G132100--Sobic010G154700 Sobic002G190900 Sobic002G190900 Sobic001G132100--Sobic002G190900 Sobic005G188100 Sobic005G188100 Sobic001G132100--Sobic005G188100 Sobic007G051000 Sobic007G051000 Sobic001G132100--Sobic007G051000 Sobic002G398901 Sobic002G398901 Sobic001G132100--Sobic002G398901 Sobic001G132100--Sobic009G119900 Sobic010G018400 Sobic010G018400 Sobic001G132100--Sobic010G018400 Sobic001G132100--Sobic004G272800 Sobic001G236300--Sobic003G367451 Sobic004G224900 Sobic004G224900 Sobic001G236300--Sobic004G224900 Sobic001G236300--Sobic007G114200 Sobic001G236300--Sobic004G272800 Sobic001G058100 Sobic001G058100 Sobic001G236300--Sobic001G058100 Sobic001G236300--Sobic001G132100 Sobic006G252200 Sobic006G252200 Sobic001G236300--Sobic006G252200 Sobic001G236300--Sobic004G335000 Sobic001G236300--Sobic007G045600 Sobic001G048832--Sobic010G154700 Sobic001G048832--Sobic001G132100 Sobic001G048832--Sobic007G051000 Sobic009G176000 Sobic009G176000 Sobic001G048832--Sobic009G176000 Sobic001G048832--Sobic005G188100 Sobic001G048832--Sobic002G190900 Sobic001G048832--Sobic009G119900 Sobic001G048832--Sobic004G272800 Sobic001G048832--Sobic002G398901
Octagon: transcription factors


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