Gene annotation
Transcriptome id Sobic.001G459500.1
Synonym Sb01g043120
Functional annotation leucine rich repeat containing protein, expressed
UniProt C5WTM6
Pfam PF13855
Panther DB PTHR23155
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G07910 : Leucine-rich repeat (LRR) family protein
RAP-DB (Rice) LOC_Os03g11360.2 : leucine rich repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a001270
Brachypodium KQK22944 , KQK22943
Barley HORVU4Hr1G068710.1 , HORVU4Hr1G068710.2 , HORVU4Hr1G068710.3 , HORVU4Hr1G068710.4 , HORVU4Hr1G068710.5 , HORVU4Hr1G068710.6 , HORVU4Hr1G068710.7
Wheat TraesCS4B02G249200 , TraesCS4D02G249500 , TraesCS4A02G055400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G323600 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1
2 Sobic.007G045600 MSP domain containing protein, expressed -
3 Sobic.010G188200 SFT2, putative, expressed -
4 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
5 Sobic.003G398300 mitochondrial import inner membrane translocase subunit Tim16, putative, expressed K17805: PAM16, mitochondrial import inner membrane translocase subunit TIM16
6 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
7 Sobic.003G367451 - K08516: synaptobrevin homolog YKT6
8 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
9 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
10 Sobic.003G152900 -(PubMedID : 26976818)@dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
11 Sobic.007G019100 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
12 Sobic.003G124800 26S proteasome non-ATPase regulatory subunit 14, putative, expressed K03030: PSMD14, RPN11, 26S proteasome regulatory subunit N11
13 Sobic.002G159300 ferrochelatase-2, chloroplast precursor, putative, expressed K01772: hemH, protoporphyrin/coproporphyrin ferrochelatase
14 Sobic.003G273900 mitochondrial carrier protein, putative, expressed -
15 Sobic.001G058100 thioredoxin, putative, expressed -
16 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
17 Sobic.009G146100 RNA recognition motif containing protein, putative, expressed K12831: SF3B4, splicing factor 3B subunit 4
18 Sobic.010G253800 expressed protein -
19 Sobic.004G204900 glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform, putative, expressed K00036: G6PD, glucose-6-phosphate 1-dehydrogenase
20 Sobic.001G143300 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C


Gene co-expression network
sample Sobic001G459500 Sobic001G459500 Sobic003G323600 Sobic003G323600 Sobic001G459500--Sobic003G323600 Sobic007G045600 Sobic007G045600 Sobic001G459500--Sobic007G045600 Sobic010G188200 Sobic010G188200 Sobic001G459500--Sobic010G188200 Sobic007G142500 Sobic007G142500 Sobic001G459500--Sobic007G142500 Sobic003G398300 Sobic003G398300 Sobic001G459500--Sobic003G398300 Sobic006G232200 Sobic006G232200 Sobic001G459500--Sobic006G232200 Sobic003G367451 Sobic003G367451 Sobic001G459500--Sobic003G367451 Sobic001G461900 Sobic001G461900 Sobic001G459500--Sobic001G461900 Sobic004G335000 Sobic004G335000 Sobic001G459500--Sobic004G335000 Sobic003G323600--Sobic007G045600 Sobic007G019100 Sobic007G019100 Sobic003G323600--Sobic007G019100 Sobic003G323600--Sobic006G232200 Sobic003G323600--Sobic001G459500 Sobic003G323600--Sobic003G367451 Sobic003G323600--Sobic007G142500 Sobic001G132100 Sobic001G132100 Sobic003G323600--Sobic001G132100 Sobic001G236300 Sobic001G236300 Sobic003G323600--Sobic001G236300 Sobic001G048832 Sobic001G048832 Sobic003G323600--Sobic001G048832 Sobic007G114200 Sobic007G114200 Sobic007G045600--Sobic007G114200 Sobic007G045600--Sobic007G019100 Sobic003G124800 Sobic003G124800 Sobic007G045600--Sobic003G124800 Sobic007G045600--Sobic006G232200 Sobic003G261400 Sobic003G261400 Sobic007G045600--Sobic003G261400 Sobic007G045600--Sobic007G142500 Sobic004G086600 Sobic004G086600 Sobic007G045600--Sobic004G086600 Sobic007G045600--Sobic001G461900 Sobic007G118000 Sobic007G118000 Sobic007G045600--Sobic007G118000 Sobic010G188200--Sobic001G459500 Sobic010G188200--Sobic007G045600 Sobic010G188200--Sobic007G142500 Sobic010G188200--Sobic001G461900 Sobic004G289800 Sobic004G289800 Sobic010G188200--Sobic004G289800 Sobic009G135600 Sobic009G135600 Sobic010G188200--Sobic009G135600 Sobic001G512400 Sobic001G512400 Sobic010G188200--Sobic001G512400 Sobic010G188200--Sobic007G118000 Sobic002G281300 Sobic002G281300 Sobic010G188200--Sobic002G281300 Sobic007G142500--Sobic007G045600 Sobic001G458700 Sobic001G458700 Sobic007G142500--Sobic001G458700 Sobic007G142500--Sobic001G461900 Sobic007G142500--Sobic003G261400 Sobic007G142500--Sobic003G323600 Sobic007G176200 Sobic007G176200 Sobic007G142500--Sobic007G176200 Sobic009G088100 Sobic009G088100 Sobic007G142500--Sobic009G088100 Sobic007G142500--Sobic004G335000 Sobic007G142500--Sobic002G281300 Sobic007G096700 Sobic007G096700 Sobic003G398300--Sobic007G096700 Sobic003G398300--Sobic003G323600 Sobic003G398300--Sobic001G459500 Sobic003G398300--Sobic003G124800 Sobic003G398300--Sobic007G045600 Sobic002G090700 Sobic002G090700 Sobic003G398300--Sobic002G090700 Sobic009G198500 Sobic009G198500 Sobic003G398300--Sobic009G198500 Sobic004G300900 Sobic004G300900 Sobic003G398300--Sobic004G300900 Sobic006G141500 Sobic006G141500 Sobic003G398300--Sobic006G141500 Sobic006G232200--Sobic003G124800 Sobic006G232200--Sobic007G045600 Sobic001G143300 Sobic001G143300 Sobic006G232200--Sobic001G143300 Sobic006G232200--Sobic009G198500 Sobic004G130100 Sobic004G130100 Sobic006G232200--Sobic004G130100 Sobic006G232200--Sobic003G323600 Sobic001G054200 Sobic001G054200 Sobic006G232200--Sobic001G054200 Sobic008G161800 Sobic008G161800 Sobic006G232200--Sobic008G161800 Sobic001G388200 Sobic001G388200 Sobic006G232200--Sobic001G388200 Sobic004G327300 Sobic004G327300 Sobic003G367451--Sobic004G327300 Sobic003G367451--Sobic001G236300 Sobic003G367451--Sobic007G114200 Sobic001G433400 Sobic001G433400 Sobic003G367451--Sobic001G433400 Sobic004G272800 Sobic004G272800 Sobic003G367451--Sobic004G272800 Sobic002G083266 Sobic002G083266 Sobic003G367451--Sobic002G083266 Sobic004G130900 Sobic004G130900 Sobic003G367451--Sobic004G130900 Sobic003G253000 Sobic003G253000 Sobic003G367451--Sobic003G253000 Sobic003G220600 Sobic003G220600 Sobic003G367451--Sobic003G220600 Sobic001G461900--Sobic009G135600 Sobic001G461900--Sobic007G045600 Sobic009G146100 Sobic009G146100 Sobic001G461900--Sobic009G146100 Sobic001G461900--Sobic004G327300 Sobic001G461900--Sobic007G142500 Sobic007G168600 Sobic007G168600 Sobic001G461900--Sobic007G168600 Sobic001G461900--Sobic004G086600 Sobic001G461900--Sobic004G335000 Sobic001G461900--Sobic007G096700 Sobic002G428200 Sobic002G428200 Sobic004G335000--Sobic002G428200 Sobic004G335000--Sobic007G176200 Sobic001G010700 Sobic001G010700 Sobic004G335000--Sobic001G010700 Sobic002G257400 Sobic002G257400 Sobic004G335000--Sobic002G257400 Sobic006G252200 Sobic006G252200 Sobic004G335000--Sobic006G252200 Sobic004G335000--Sobic001G236300 Sobic004G335000--Sobic001G461900 Sobic001G058100 Sobic001G058100 Sobic004G335000--Sobic001G058100 Sobic004G335000--Sobic007G045600
Octagon: transcription factors


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