Gene annotation
Transcriptome id Sobic.010G188200.1
Synonym Sb10g023840
Functional annotation SFT2, putative, expressed
UniProt C5Z5R0
Pfam PF04178
Panther DB PTHR23137 PTHR23137:SF10
NCBI CDD KOG2887; Membrane protein involved in ER to Golgi transport
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT4G26550 : Got1/Sft2-like vescicle transport protein family
RAP-DB (Rice) LOC_Os06g40630.1 : SFT2, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK17720
Barley -
Wheat TraesCS7A02G381000 , TraesCS7B02G282900 , TraesCS7D02G377300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G459500 leucine rich repeat containing protein, expressed -
2 Sobic.007G045600 MSP domain containing protein, expressed -
3 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
4 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
5 Sobic.004G289800 expressed protein -
6 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
7 Sobic.001G512400 expressed protein -
8 Sobic.007G118000 double-stranded RNA binding motif containing protein, expressed -
9 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
10 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
11 Sobic.001G054200 green ripe-like, putative, expressed -
12 Sobic.003G349300 serine/threonine-protein kinase AFC1, putative, expressed K08287: dual-specificity kinase
13 Sobic.008G110500 UDP-N-acetylglucosamine transferase subunit ALG13, putative, expressed K07432: beta-1,4-N-acetylglucosaminyltransferase
14 Sobic.007G019100 mitochondrial ribosomal protein S10, putative, expressed K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
15 Sobic.004G194900 expressed protein -
16 Sobic.006G232200 SNARE domain containing protein, putative, expressed K08501: syntaxin 8
K08503: syntaxin of plants SYP5
17 Sobic.003G374000 ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed K17618: ubiquitin-like domain-containing CTD phosphatase 1
18 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
19 Sobic.005G086500 clathrin adaptor complex small chain domain containing protein, expressed K11827: AP-2 complex subunit sigma-1
20 Sobic.006G263900 ubiquinone biosynthesis protein COQ4, putative, expressed K18586: ubiquinone biosynthesis protein COQ4


Gene co-expression network
sample Sobic010G188200 Sobic010G188200 Sobic001G459500 Sobic001G459500 Sobic010G188200--Sobic001G459500 Sobic007G045600 Sobic007G045600 Sobic010G188200--Sobic007G045600 Sobic007G142500 Sobic007G142500 Sobic010G188200--Sobic007G142500 Sobic001G461900 Sobic001G461900 Sobic010G188200--Sobic001G461900 Sobic004G289800 Sobic004G289800 Sobic010G188200--Sobic004G289800 Sobic009G135600 Sobic009G135600 Sobic010G188200--Sobic009G135600 Sobic001G512400 Sobic001G512400 Sobic010G188200--Sobic001G512400 Sobic007G118000 Sobic007G118000 Sobic010G188200--Sobic007G118000 Sobic002G281300 Sobic002G281300 Sobic010G188200--Sobic002G281300 Sobic003G323600 Sobic003G323600 Sobic001G459500--Sobic003G323600 Sobic001G459500--Sobic007G045600 Sobic001G459500--Sobic010G188200 Sobic001G459500--Sobic007G142500 Sobic003G398300 Sobic003G398300 Sobic001G459500--Sobic003G398300 Sobic006G232200 Sobic006G232200 Sobic001G459500--Sobic006G232200 Sobic003G367451 Sobic003G367451 Sobic001G459500--Sobic003G367451 Sobic001G459500--Sobic001G461900 Sobic004G335000 Sobic004G335000 Sobic001G459500--Sobic004G335000 Sobic007G114200 Sobic007G114200 Sobic007G045600--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic007G045600--Sobic007G019100 Sobic003G124800 Sobic003G124800 Sobic007G045600--Sobic003G124800 Sobic007G045600--Sobic006G232200 Sobic003G261400 Sobic003G261400 Sobic007G045600--Sobic003G261400 Sobic007G045600--Sobic007G142500 Sobic004G086600 Sobic004G086600 Sobic007G045600--Sobic004G086600 Sobic007G045600--Sobic001G461900 Sobic007G045600--Sobic007G118000 Sobic007G142500--Sobic007G045600 Sobic001G458700 Sobic001G458700 Sobic007G142500--Sobic001G458700 Sobic007G142500--Sobic001G461900 Sobic007G142500--Sobic003G261400 Sobic007G142500--Sobic003G323600 Sobic007G176200 Sobic007G176200 Sobic007G142500--Sobic007G176200 Sobic009G088100 Sobic009G088100 Sobic007G142500--Sobic009G088100 Sobic007G142500--Sobic004G335000 Sobic007G142500--Sobic002G281300 Sobic001G461900--Sobic009G135600 Sobic001G461900--Sobic007G045600 Sobic009G146100 Sobic009G146100 Sobic001G461900--Sobic009G146100 Sobic004G327300 Sobic004G327300 Sobic001G461900--Sobic004G327300 Sobic001G461900--Sobic007G142500 Sobic007G168600 Sobic007G168600 Sobic001G461900--Sobic007G168600 Sobic001G461900--Sobic004G086600 Sobic001G461900--Sobic004G335000 Sobic007G096700 Sobic007G096700 Sobic001G461900--Sobic007G096700 Sobic004G289800--Sobic007G045600 Sobic004G289800--Sobic009G135600 Sobic004G289800--Sobic001G461900 Sobic004G289800--Sobic010G188200 Sobic003G349300 Sobic003G349300 Sobic004G289800--Sobic003G349300 Sobic001G294900 Sobic001G294900 Sobic004G289800--Sobic001G294900 Sobic006G263900 Sobic006G263900 Sobic004G289800--Sobic006G263900 Sobic001G054200 Sobic001G054200 Sobic004G289800--Sobic001G054200 Sobic004G289800--Sobic007G142500 Sobic009G135600--Sobic001G461900 Sobic009G135600--Sobic003G349300 Sobic009G135600--Sobic009G146100 Sobic001G433400 Sobic001G433400 Sobic009G135600--Sobic001G433400 Sobic002G385900 Sobic002G385900 Sobic009G135600--Sobic002G385900 Sobic001G388200 Sobic001G388200 Sobic009G135600--Sobic001G388200 Sobic002G400000 Sobic002G400000 Sobic009G135600--Sobic002G400000 Sobic009G135600--Sobic001G294900 Sobic009G135600--Sobic001G054200 Sobic001G313500 Sobic001G313500 Sobic001G512400--Sobic001G313500 Sobic001G512400--Sobic009G135600 Sobic002G040700 Sobic002G040700 Sobic001G512400--Sobic002G040700 Sobic001G512400--Sobic006G263900 Sobic001G421400 Sobic001G421400 Sobic001G512400--Sobic001G421400 Sobic008G165000 Sobic008G165000 Sobic001G512400--Sobic008G165000 Sobic001G161900 Sobic001G161900 Sobic001G512400--Sobic001G161900 Sobic001G512400--Sobic003G349300 Sobic001G512400--Sobic010G188200 Sobic007G118000--Sobic007G045600 Sobic001G033500 Sobic001G033500 Sobic007G118000--Sobic001G033500 Sobic001G402300 Sobic001G402300 Sobic007G118000--Sobic001G402300 Sobic003G374000 Sobic003G374000 Sobic007G118000--Sobic003G374000 Sobic004G072800 Sobic004G072800 Sobic007G118000--Sobic004G072800 Sobic007G118000--Sobic002G281300 Sobic001G067900 Sobic001G067900 Sobic007G118000--Sobic001G067900 Sobic004G141700 Sobic004G141700 Sobic007G118000--Sobic004G141700 Sobic001G323300 Sobic001G323300 Sobic007G118000--Sobic001G323300 Sobic002G281300--Sobic003G261400 Sobic006G250900 Sobic006G250900 Sobic002G281300--Sobic006G250900 Sobic003G007500 Sobic003G007500 Sobic002G281300--Sobic003G007500 Sobic002G281300--Sobic001G067900 Sobic010G205300 Sobic010G205300 Sobic002G281300--Sobic010G205300 Sobic002G281300--Sobic001G388200 Sobic004G194900 Sobic004G194900 Sobic002G281300--Sobic004G194900 Sobic002G281300--Sobic001G054200 Sobic002G281300--Sobic003G349300
Octagon: transcription factors


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