Gene annotation
Transcriptome id Sobic.004G335000.2,Sobic.004G335000.1
Synonym ATS6A.2, Sb04g036320, RPT5A
Functional annotation 26S protease regulatory subunit 6A, putative, expressed
UniProt A0A194YSY5 , A0A194YST1
Pfam PF07728
Panther DB PTHR23073 PTHR23073:SF7
NCBI CDD -
KEGG Orthology K03065; PSMC3, 26S proteasome regulatory subunit T5
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT3G05530 : regulatory particle triple-A ATPase 5A
RAP-DB (Rice) LOC_Os06g07630.1 : 26S protease regulatory subunit 6A, putative, expressed
MaizeGDB (Corn) Zm00025a042856 , Zm00025a022510
Brachypodium KQK19391 , PNT76419 , KQK01210
Barley HORVU6Hr1G087650.1 , HORVU6Hr1G087650.2
Wheat TraesCS3B02G457100 , TraesCS3A02G421900 , TraesCS3D02G417000 , TraesCS3D02G417000
Populus PNS22333 , PNT35150 , PNT35149 , PNT35148


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cDNA sequences
Sobic.004G335000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
2 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
3 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
4 Sobic.002G257400 peptidase, T1 family, putative, expressed -
5 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
6 Sobic.001G236300 cell division control protein 48 homolog E, putative, expressed K13525: VCP, transitional endoplasmic reticulum ATPase
7 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
8 Sobic.001G058100 thioredoxin, putative, expressed -
9 Sobic.007G045600 MSP domain containing protein, expressed -
10 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
11 Sobic.003G104700 Rer1 protein, putative, expressed -
12 Sobic.007G114200 alpha-soluble NSF attachment protein, putative, expressed K15296: NAPA, SNAPA, alpha-soluble NSF attachment protein
13 Sobic.007G142500 EF hand family protein, putative, expressed K06268: PPP3R, serine/threonine-protein phosphatase 2B regulatory subunit
14 Sobic.001G458700 26S protease regulatory subunit 6B, putative, expressed K03063: PSMC4, 26S proteasome regulatory subunit T3
15 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
16 Sobic.004G204800 26S proteasome non-ATPase regulatory subunit 6, putative, expressed K03037: PSMD6, 26S proteasome regulatory subunit N7
17 Sobic.009G135600 UBA/TS-N domain containing protein, expressed -
18 Sobic.001G542900 uncharacterized Cys-rich domain containing protein, putative, expressed -
19 Sobic.003G021200 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
20 Sobic.002G423800 trafficking protein particle complex subunit, putative, expressed -


Gene co-expression network
sample Sobic004G335000 Sobic004G335000 Sobic002G428200 Sobic002G428200 Sobic004G335000--Sobic002G428200 Sobic007G176200 Sobic007G176200 Sobic004G335000--Sobic007G176200 Sobic001G010700 Sobic001G010700 Sobic004G335000--Sobic001G010700 Sobic002G257400 Sobic002G257400 Sobic004G335000--Sobic002G257400 Sobic006G252200 Sobic006G252200 Sobic004G335000--Sobic006G252200 Sobic001G236300 Sobic001G236300 Sobic004G335000--Sobic001G236300 Sobic001G461900 Sobic001G461900 Sobic004G335000--Sobic001G461900 Sobic001G058100 Sobic001G058100 Sobic004G335000--Sobic001G058100 Sobic007G045600 Sobic007G045600 Sobic004G335000--Sobic007G045600 Sobic002G428200--Sobic004G335000 Sobic002G428200--Sobic007G176200 Sobic006G211800 Sobic006G211800 Sobic002G428200--Sobic006G211800 Sobic004G224900 Sobic004G224900 Sobic002G428200--Sobic004G224900 Sobic002G428200--Sobic006G252200 Sobic001G502200 Sobic001G502200 Sobic002G428200--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic002G428200--Sobic008G137600 Sobic002G428200--Sobic001G010700 Sobic003G104700 Sobic003G104700 Sobic002G428200--Sobic003G104700 Sobic001G458700 Sobic001G458700 Sobic007G176200--Sobic001G458700 Sobic007G176200--Sobic001G010700 Sobic007G176200--Sobic006G252200 Sobic003G330500 Sobic003G330500 Sobic007G176200--Sobic003G330500 Sobic007G176200--Sobic004G224900 Sobic007G176200--Sobic002G428200 Sobic007G176200--Sobic004G335000 Sobic002G341800 Sobic002G341800 Sobic007G176200--Sobic002G341800 Sobic009G067000 Sobic009G067000 Sobic007G176200--Sobic009G067000 Sobic001G010700--Sobic007G176200 Sobic001G010700--Sobic006G252200 Sobic001G010700--Sobic001G458700 Sobic001G010700--Sobic003G330500 Sobic001G010700--Sobic004G335000 Sobic001G010700--Sobic002G428200 Sobic001G010700--Sobic004G224900 Sobic003G043400 Sobic003G043400 Sobic001G010700--Sobic003G043400 Sobic002G423800 Sobic002G423800 Sobic001G010700--Sobic002G423800 Sobic007G076300 Sobic007G076300 Sobic002G257400--Sobic007G076300 Sobic002G257400--Sobic004G224900 Sobic002G257400--Sobic004G335000 Sobic002G257400--Sobic002G428200 Sobic007G152400 Sobic007G152400 Sobic002G257400--Sobic007G152400 Sobic004G204800 Sobic004G204800 Sobic002G257400--Sobic004G204800 Sobic007G186800 Sobic007G186800 Sobic002G257400--Sobic007G186800 Sobic004G138800 Sobic004G138800 Sobic002G257400--Sobic004G138800 Sobic002G257400--Sobic001G058100 Sobic006G252200--Sobic007G176200 Sobic006G252200--Sobic001G458700 Sobic006G252200--Sobic004G224900 Sobic006G252200--Sobic001G010700 Sobic006G252200--Sobic003G330500 Sobic006G252200--Sobic002G428200 Sobic006G252200--Sobic004G138800 Sobic001G283200 Sobic001G283200 Sobic006G252200--Sobic001G283200 Sobic001G096100 Sobic001G096100 Sobic006G252200--Sobic001G096100 Sobic003G367451 Sobic003G367451 Sobic001G236300--Sobic003G367451 Sobic001G236300--Sobic004G224900 Sobic007G114200 Sobic007G114200 Sobic001G236300--Sobic007G114200 Sobic004G272800 Sobic004G272800 Sobic001G236300--Sobic004G272800 Sobic001G236300--Sobic001G058100 Sobic001G132100 Sobic001G132100 Sobic001G236300--Sobic001G132100 Sobic001G236300--Sobic006G252200 Sobic001G236300--Sobic004G335000 Sobic001G236300--Sobic007G045600 Sobic009G135600 Sobic009G135600 Sobic001G461900--Sobic009G135600 Sobic001G461900--Sobic007G045600 Sobic009G146100 Sobic009G146100 Sobic001G461900--Sobic009G146100 Sobic004G327300 Sobic004G327300 Sobic001G461900--Sobic004G327300 Sobic007G142500 Sobic007G142500 Sobic001G461900--Sobic007G142500 Sobic007G168600 Sobic007G168600 Sobic001G461900--Sobic007G168600 Sobic004G086600 Sobic004G086600 Sobic001G461900--Sobic004G086600 Sobic001G461900--Sobic004G335000 Sobic007G096700 Sobic007G096700 Sobic001G461900--Sobic007G096700 Sobic001G058100--Sobic001G236300 Sobic001G058100--Sobic004G335000 Sobic001G058100--Sobic002G257400 Sobic001G058100--Sobic006G252200 Sobic010G044200 Sobic010G044200 Sobic001G058100--Sobic010G044200 Sobic001G289400 Sobic001G289400 Sobic001G058100--Sobic001G289400 Sobic001G058100--Sobic003G104700 Sobic006G220900 Sobic006G220900 Sobic001G058100--Sobic006G220900 Sobic002G083266 Sobic002G083266 Sobic001G058100--Sobic002G083266 Sobic007G045600--Sobic007G114200 Sobic007G019100 Sobic007G019100 Sobic007G045600--Sobic007G019100 Sobic003G124800 Sobic003G124800 Sobic007G045600--Sobic003G124800 Sobic006G232200 Sobic006G232200 Sobic007G045600--Sobic006G232200 Sobic003G261400 Sobic003G261400 Sobic007G045600--Sobic003G261400 Sobic007G045600--Sobic007G142500 Sobic007G045600--Sobic004G086600 Sobic007G045600--Sobic001G461900 Sobic007G118000 Sobic007G118000 Sobic007G045600--Sobic007G118000
Octagon: transcription factors


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