Gene annotation
Transcriptome id Sobic.002G257400.2
Synonym PBF1, Sb02g029260
Functional annotation peptidase, T1 family, putative, expressed
UniProt A0A1W0W5X7
Pfam PF00227
Panther DB PTHR11599 PTHR11599:SF55
NCBI CDD KOG0179; 20S proteasome, regulatory subunit beta type PSMB1/PRE7
KEGG Orthology -
Gene Ontology GO:0005839; proteasome core complex GO:0004298threonine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT3G60820 : N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
RAP-DB (Rice) LOC_Os09g32800.1 : peptidase, T1 family, putative, expressed
MaizeGDB (Corn) Zm00025a047572 , Zm00025a014302
Brachypodium -
Barley HORVU5Hr1G076130.3 , HORVU5Hr1G076130.4 , HORVU5Hr1G076130.2 , HORVU5Hr1G076130.1
Wheat TraesCS5A02G285600 , TraesCS5D02G292900 , TraesCS5B02G284800
Populus -


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cDNA sequences
Sobic.002G257400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G076300 26S proteasome non-ATPase regulatory subunit 8, putative, expressed K03031: PSMD8, 26S proteasome regulatory subunit N12
2 Sobic.004G224900 peptidase, T1 family, putative, expressed K02726: 20S proteasome subunit alpha 2
3 Sobic.004G335000 26S protease regulatory subunit 6A, putative, expressed K03065: PSMC3, 26S proteasome regulatory subunit T5
4 Sobic.002G428200 26S protease regulatory subunit 4, putative, expressed K03062: PSMC1, 26S proteasome regulatory subunit T2
5 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
6 Sobic.004G204800 26S proteasome non-ATPase regulatory subunit 6, putative, expressed K03037: PSMD6, 26S proteasome regulatory subunit N7
7 Sobic.007G186800 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
8 Sobic.004G138800 prefoldin subunit, putative, expressed K09548: prefoldin subunit 1
9 Sobic.001G058100 thioredoxin, putative, expressed -
10 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
11 Sobic.006G252200 MEE34, putative, expressed K03038: PSMD7, 26S proteasome regulatory subunit N8
12 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
13 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
14 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
15 Sobic.010G154700 - -
16 Sobic.009G122100 tetratricopeptide repeat containing protein, putative, expressed K17969: FIS1, TTC11, mitochondrial fission 1 protein
17 Sobic.005G188100 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
18 Sobic.001G010700 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
19 Sobic.003G104700 Rer1 protein, putative, expressed -
20 Sobic.004G310300 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3


Gene co-expression network
sample Sobic002G257400 Sobic002G257400 Sobic007G076300 Sobic007G076300 Sobic002G257400--Sobic007G076300 Sobic004G224900 Sobic004G224900 Sobic002G257400--Sobic004G224900 Sobic004G335000 Sobic004G335000 Sobic002G257400--Sobic004G335000 Sobic002G428200 Sobic002G428200 Sobic002G257400--Sobic002G428200 Sobic007G152400 Sobic007G152400 Sobic002G257400--Sobic007G152400 Sobic004G204800 Sobic004G204800 Sobic002G257400--Sobic004G204800 Sobic007G186800 Sobic007G186800 Sobic002G257400--Sobic007G186800 Sobic004G138800 Sobic004G138800 Sobic002G257400--Sobic004G138800 Sobic001G058100 Sobic001G058100 Sobic002G257400--Sobic001G058100 Sobic007G076300--Sobic004G224900 Sobic007G076300--Sobic004G138800 Sobic007G076300--Sobic002G257400 Sobic003G330500 Sobic003G330500 Sobic007G076300--Sobic003G330500 Sobic001G505500 Sobic001G505500 Sobic007G076300--Sobic001G505500 Sobic003G129800 Sobic003G129800 Sobic007G076300--Sobic003G129800 Sobic004G310300 Sobic004G310300 Sobic007G076300--Sobic004G310300 Sobic005G050500 Sobic005G050500 Sobic007G076300--Sobic005G050500 Sobic010G154700 Sobic010G154700 Sobic007G076300--Sobic010G154700 Sobic004G224900--Sobic003G330500 Sobic006G252200 Sobic006G252200 Sobic004G224900--Sobic006G252200 Sobic007G176200 Sobic007G176200 Sobic004G224900--Sobic007G176200 Sobic004G224900--Sobic004G138800 Sobic004G224900--Sobic007G076300 Sobic001G481700 Sobic001G481700 Sobic004G224900--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic004G224900--Sobic001G502200 Sobic001G458700 Sobic001G458700 Sobic004G224900--Sobic001G458700 Sobic001G236300 Sobic001G236300 Sobic004G224900--Sobic001G236300 Sobic004G335000--Sobic002G428200 Sobic004G335000--Sobic007G176200 Sobic001G010700 Sobic001G010700 Sobic004G335000--Sobic001G010700 Sobic004G335000--Sobic002G257400 Sobic004G335000--Sobic006G252200 Sobic004G335000--Sobic001G236300 Sobic001G461900 Sobic001G461900 Sobic004G335000--Sobic001G461900 Sobic004G335000--Sobic001G058100 Sobic007G045600 Sobic007G045600 Sobic004G335000--Sobic007G045600 Sobic002G428200--Sobic004G335000 Sobic002G428200--Sobic007G176200 Sobic006G211800 Sobic006G211800 Sobic002G428200--Sobic006G211800 Sobic002G428200--Sobic004G224900 Sobic002G428200--Sobic006G252200 Sobic002G428200--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic002G428200--Sobic008G137600 Sobic002G428200--Sobic001G010700 Sobic003G104700 Sobic003G104700 Sobic002G428200--Sobic003G104700 Sobic005G111100 Sobic005G111100 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic007G152400--Sobic002G428200 Sobic007G152400--Sobic002G257400 Sobic001G128400 Sobic001G128400 Sobic007G152400--Sobic001G128400 Sobic007G152400--Sobic001G481700 Sobic007G152400--Sobic008G137600 Sobic007G152400--Sobic004G204800 Sobic002G331300 Sobic002G331300 Sobic007G152400--Sobic002G331300 Sobic004G204800--Sobic002G257400 Sobic004G204800--Sobic007G152400 Sobic004G204800--Sobic004G335000 Sobic003G043400 Sobic003G043400 Sobic004G204800--Sobic003G043400 Sobic010G266300 Sobic010G266300 Sobic004G204800--Sobic010G266300 Sobic004G204800--Sobic001G058100 Sobic004G204800--Sobic002G428200 Sobic003G428200 Sobic003G428200 Sobic004G204800--Sobic003G428200 Sobic004G204800--Sobic001G010700 Sobic001G034700 Sobic001G034700 Sobic007G186800--Sobic001G034700 Sobic007G134000 Sobic007G134000 Sobic007G186800--Sobic007G134000 Sobic003G254800 Sobic003G254800 Sobic007G186800--Sobic003G254800 Sobic005G188100 Sobic005G188100 Sobic007G186800--Sobic005G188100 Sobic007G186800--Sobic002G257400 Sobic003G018600 Sobic003G018600 Sobic007G186800--Sobic003G018600 Sobic001G086300 Sobic001G086300 Sobic007G186800--Sobic001G086300 Sobic007G186800--Sobic001G128400 Sobic001G172000 Sobic001G172000 Sobic007G186800--Sobic001G172000 Sobic001G418900 Sobic001G418900 Sobic004G138800--Sobic001G418900 Sobic004G138800--Sobic004G224900 Sobic004G138800--Sobic007G076300 Sobic004G138800--Sobic001G505500 Sobic009G119900 Sobic009G119900 Sobic004G138800--Sobic009G119900 Sobic001G096100 Sobic001G096100 Sobic004G138800--Sobic001G096100 Sobic004G138800--Sobic003G330500 Sobic001G007600 Sobic001G007600 Sobic004G138800--Sobic001G007600 Sobic004G138800--Sobic006G252200 Sobic001G058100--Sobic001G236300 Sobic001G058100--Sobic004G335000 Sobic001G058100--Sobic002G257400 Sobic001G058100--Sobic006G252200 Sobic010G044200 Sobic010G044200 Sobic001G058100--Sobic010G044200 Sobic001G289400 Sobic001G289400 Sobic001G058100--Sobic001G289400 Sobic001G058100--Sobic003G104700 Sobic006G220900 Sobic006G220900 Sobic001G058100--Sobic006G220900 Sobic002G083266 Sobic002G083266 Sobic001G058100--Sobic002G083266
Octagon: transcription factors


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