Gene annotation
Transcriptome id Sobic.005G188100.1
Synonym Sb05g024560, ATPAE1, PAE1
Functional annotation peptidase, T1 family, putative, expressed
UniProt C5Y6F3
Pfam PF10584 PF00227
Panther DB PTHR11599 PTHR11599:SF14
NCBI CDD KOG0176; 20S proteasome, regulatory subunit alpha type PSMA5/PUP2
KEGG Orthology K02729; 20S proteasome subunit alpha 5
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process GO:0004175endopeptidase activity GO:0005839proteasome core complex GO:0004298threonine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT1G53850 : 20S proteasome alpha subunit E1
RAP-DB (Rice) LOC_Os11g40140.1 : peptidase, T1 family, putative, expressed
MaizeGDB (Corn) Zm00025a053425 , Zm00025a029338 , Zm00025a000672
Brachypodium KQJ86675 , KQJ87824
Barley HORVU5Hr1G038710.1 , HORVU4Hr1G040770.4 , HORVU4Hr1G040770.5 , HORVU4Hr1G040770.6 , HORVU4Hr1G040770.7 , HORVU4Hr1G040770.1 , HORVU4Hr1G040770.2 , HORVU4Hr1G040770.3 , HORVU4Hr1G040770.8 , HORVU4Hr1G040770.9
Wheat TraesCS4B02G151700 , TraesCS5A02G109000 , TraesCS5B02G114000 , TraesCS4A02G167300 , TraesCS5D02G121300 , TraesCS4D02G157700
Populus -


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cDNA sequences
Sobic.005G188100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G190900 expressed protein -
2 Sobic.009G163800 60S ribosomal protein L36-2, putative, expressed K02920: RP-L36e, large subunit ribosomal protein L36e
3 Sobic.002G398901 - -
4 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
5 Sobic.009G166500 40S ribosomal protein S23, putative, expressed K02973: RP-S23e, small subunit ribosomal protein S23e
6 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
7 Sobic.006G047400 60S ribosomal protein L37a, putative, expressed K02921: RP-L37Ae, large subunit ribosomal protein L37Ae
8 Sobic.010G012500 ATOZI1, putative, expressed -
9 Sobic.004G211833 - K02267: cytochrome c oxidase subunit 6b
10 Sobic.001G048832 - -
11 Sobic.006G213000 ribosomal protein S17, putative, expressed K02949: RP-S11e, small subunit ribosomal protein S11e
12 Sobic.002G081600 ribosomal protein L7Ae, putative, expressed K02951: RP-S12e, small subunit ribosomal protein S12e
13 Sobic.004G280700 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17781: mitochondrial import inner membrane translocase subunit TIM13
14 Sobic.009G076400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
15 Sobic.004G310300 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
16 Sobic.003G408100 ribosomal protein L13, putative, expressed K02873: RP-L13e, large subunit ribosomal protein L13e
17 Sobic.005G110800 - -
18 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
19 Sobic.001G132100 expressed protein -
20 Sobic.010G205400 ribosomal protein, putative, expressed K02955: RP-S14e, small subunit ribosomal protein S14e


Gene co-expression network
sample Sobic005G188100 Sobic005G188100 Sobic002G190900 Sobic002G190900 Sobic005G188100--Sobic002G190900 Sobic009G163800 Sobic009G163800 Sobic005G188100--Sobic009G163800 Sobic002G398901 Sobic002G398901 Sobic005G188100--Sobic002G398901 Sobic010G204500 Sobic010G204500 Sobic005G188100--Sobic010G204500 Sobic009G166500 Sobic009G166500 Sobic005G188100--Sobic009G166500 Sobic007G051000 Sobic007G051000 Sobic005G188100--Sobic007G051000 Sobic006G047400 Sobic006G047400 Sobic005G188100--Sobic006G047400 Sobic010G012500 Sobic010G012500 Sobic005G188100--Sobic010G012500 Sobic004G211833 Sobic004G211833 Sobic005G188100--Sobic004G211833 Sobic002G190900--Sobic002G398901 Sobic002G190900--Sobic010G012500 Sobic002G190900--Sobic007G051000 Sobic009G176000 Sobic009G176000 Sobic002G190900--Sobic009G176000 Sobic002G081600 Sobic002G081600 Sobic002G190900--Sobic002G081600 Sobic002G190900--Sobic005G188100 Sobic001G281400 Sobic001G281400 Sobic002G190900--Sobic001G281400 Sobic002G190900--Sobic004G211833 Sobic001G374700 Sobic001G374700 Sobic002G190900--Sobic001G374700 Sobic009G163800--Sobic009G166500 Sobic009G050300 Sobic009G050300 Sobic009G163800--Sobic009G050300 Sobic003G346600 Sobic003G346600 Sobic009G163800--Sobic003G346600 Sobic007G138700 Sobic007G138700 Sobic009G163800--Sobic007G138700 Sobic009G163800--Sobic006G047400 Sobic003G408100 Sobic003G408100 Sobic009G163800--Sobic003G408100 Sobic004G331400 Sobic004G331400 Sobic009G163800--Sobic004G331400 Sobic009G163800--Sobic002G081600 Sobic001G091801 Sobic001G091801 Sobic009G163800--Sobic001G091801 Sobic002G398901--Sobic002G190900 Sobic002G398901--Sobic010G012500 Sobic002G398901--Sobic009G176000 Sobic002G398901--Sobic007G051000 Sobic002G398901--Sobic004G211833 Sobic002G398901--Sobic002G081600 Sobic002G418400 Sobic002G418400 Sobic002G398901--Sobic002G418400 Sobic006G083500 Sobic006G083500 Sobic002G398901--Sobic006G083500 Sobic009G215200 Sobic009G215200 Sobic002G398901--Sobic009G215200 Sobic001G403500 Sobic001G403500 Sobic010G204500--Sobic001G403500 Sobic001G483100 Sobic001G483100 Sobic010G204500--Sobic001G483100 Sobic001G016400 Sobic001G016400 Sobic010G204500--Sobic001G016400 Sobic010G204500--Sobic009G050300 Sobic009G180000 Sobic009G180000 Sobic010G204500--Sobic009G180000 Sobic002G056200 Sobic002G056200 Sobic010G204500--Sobic002G056200 Sobic010G204500--Sobic002G081600 Sobic010G204500--Sobic009G215200 Sobic001G018900 Sobic001G018900 Sobic010G204500--Sobic001G018900 Sobic009G166500--Sobic006G047400 Sobic009G166500--Sobic009G163800 Sobic009G166500--Sobic003G346600 Sobic009G166500--Sobic009G050300 Sobic009G166500--Sobic001G091801 Sobic009G166500--Sobic002G081600 Sobic009G166500--Sobic001G374700 Sobic009G166500--Sobic001G403500 Sobic010G060500 Sobic010G060500 Sobic009G166500--Sobic010G060500 Sobic007G051000--Sobic010G012500 Sobic007G051000--Sobic009G176000 Sobic007G051000--Sobic002G398901 Sobic007G051000--Sobic004G211833 Sobic007G051000--Sobic002G190900 Sobic007G051000--Sobic006G083500 Sobic001G018500 Sobic001G018500 Sobic007G051000--Sobic001G018500 Sobic003G209000 Sobic003G209000 Sobic007G051000--Sobic003G209000 Sobic007G051000--Sobic010G204500 Sobic006G047400--Sobic009G166500 Sobic006G047400--Sobic001G374700 Sobic006G047400--Sobic009G163800 Sobic001G493001 Sobic001G493001 Sobic006G047400--Sobic001G493001 Sobic002G175100 Sobic002G175100 Sobic006G047400--Sobic002G175100 Sobic006G047400--Sobic003G408100 Sobic006G047400--Sobic001G091801 Sobic001G130301 Sobic001G130301 Sobic006G047400--Sobic001G130301 Sobic006G047400--Sobic009G215200 Sobic010G012500--Sobic004G211833 Sobic010G012500--Sobic002G398901 Sobic010G012500--Sobic006G083500 Sobic010G012500--Sobic007G051000 Sobic010G012500--Sobic002G190900 Sobic004G220000 Sobic004G220000 Sobic010G012500--Sobic004G220000 Sobic010G012500--Sobic009G176000 Sobic002G375100 Sobic002G375100 Sobic010G012500--Sobic002G375100 Sobic010G012500--Sobic002G418400 Sobic004G211833--Sobic010G012500 Sobic004G211833--Sobic006G083500 Sobic004G211833--Sobic002G398901 Sobic004G211833--Sobic004G220000 Sobic004G211833--Sobic007G051000 Sobic004G211833--Sobic009G176000 Sobic004G211833--Sobic002G418400 Sobic004G211833--Sobic002G190900 Sobic003G215700 Sobic003G215700 Sobic004G211833--Sobic003G215700
Octagon: transcription factors


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