Gene annotation
Transcriptome id Sobic.001G132100.1
Synonym SDH5, Sb01g011580
Functional annotation expressed protein
UniProt C5WPI6
Pfam PF14290
Panther DB PTHR36139 PTHR36139:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G47420 : succinate dehydrogenase 5
RAP-DB (Rice) LOC_Os04g34100.1 : expressed protein
MaizeGDB (Corn) Zm00025a007655 , Zm00025a017090
Brachypodium KQK19734 , KQJ82575
Barley HORVU7Hr1G012370.1 , HORVU7Hr1G012370.2 , HORVU7Hr1G012370.3 , HORVU7Hr1G012370.4 , HORVU7Hr1G012370.5 , HORVU7Hr1G012370.6 , HORVU7Hr1G012370.7
Wheat TraesCS2A02G298400 , TraesCS7D02G064400 , TraesCS2D02G296500 , TraesCS4A02G418100 , TraesCS2B02G314900
Populus -


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cDNA sequences
Sobic.001G132100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G048832 - -
2 Sobic.010G154700 - -
3 Sobic.002G190900 expressed protein -
4 Sobic.005G188100 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
5 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
6 Sobic.002G398901 - -
7 Sobic.009G119900 acyl carrier protein, putative, expressed K03955: NADH dehydrogenase (ubiquinone) 1 alpha/beta subcomplex 1, acyl-carrier protein
8 Sobic.010G018400 expressed protein K02153: ATPeV0E, V-type H+-transporting ATPase subunit e
9 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
10 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
11 Sobic.004G310300 phosphate carrier protein, mitochondrial precursor, putative, expressed K15102: SLC25A3, PHC, solute carrier family 25 (mitochondrial phosphate transporter), member 3
12 Sobic.001G224400 eukaryotic translation initiation factor, putative, expressed K03259: translation initiation factor 4E
13 Sobic.009G176000 expressed protein K03945: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 1
14 Sobic.010G012500 ATOZI1, putative, expressed -
15 Sobic.008G129400 cytochrome c oxidase polypeptide Vc, putative, expressed -
16 Sobic.008G189300 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
17 Sobic.001G445800 expressed protein -
18 Sobic.008G161800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
19 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
20 Sobic.004G211833 - K02267: cytochrome c oxidase subunit 6b


Gene co-expression network
sample Sobic001G132100 Sobic001G132100 Sobic001G048832 Sobic001G048832 Sobic001G132100--Sobic001G048832 Sobic010G154700 Sobic010G154700 Sobic001G132100--Sobic010G154700 Sobic002G190900 Sobic002G190900 Sobic001G132100--Sobic002G190900 Sobic005G188100 Sobic005G188100 Sobic001G132100--Sobic005G188100 Sobic007G051000 Sobic007G051000 Sobic001G132100--Sobic007G051000 Sobic002G398901 Sobic002G398901 Sobic001G132100--Sobic002G398901 Sobic009G119900 Sobic009G119900 Sobic001G132100--Sobic009G119900 Sobic010G018400 Sobic010G018400 Sobic001G132100--Sobic010G018400 Sobic004G272800 Sobic004G272800 Sobic001G132100--Sobic004G272800 Sobic001G048832--Sobic010G154700 Sobic001G048832--Sobic001G132100 Sobic001G048832--Sobic007G051000 Sobic009G176000 Sobic009G176000 Sobic001G048832--Sobic009G176000 Sobic001G048832--Sobic005G188100 Sobic001G048832--Sobic002G190900 Sobic001G048832--Sobic009G119900 Sobic001G048832--Sobic004G272800 Sobic001G048832--Sobic002G398901 Sobic010G154700--Sobic001G048832 Sobic010G154700--Sobic001G132100 Sobic010G154700--Sobic007G051000 Sobic001G074700 Sobic001G074700 Sobic010G154700--Sobic001G074700 Sobic003G155400 Sobic003G155400 Sobic010G154700--Sobic003G155400 Sobic010G154700--Sobic009G119900 Sobic010G154700--Sobic002G190900 Sobic010G154700--Sobic002G398901 Sobic010G154700--Sobic009G176000 Sobic002G190900--Sobic002G398901 Sobic010G012500 Sobic010G012500 Sobic002G190900--Sobic010G012500 Sobic002G190900--Sobic007G051000 Sobic002G190900--Sobic009G176000 Sobic002G081600 Sobic002G081600 Sobic002G190900--Sobic002G081600 Sobic002G190900--Sobic005G188100 Sobic001G281400 Sobic001G281400 Sobic002G190900--Sobic001G281400 Sobic004G211833 Sobic004G211833 Sobic002G190900--Sobic004G211833 Sobic001G374700 Sobic001G374700 Sobic002G190900--Sobic001G374700 Sobic005G188100--Sobic002G190900 Sobic009G163800 Sobic009G163800 Sobic005G188100--Sobic009G163800 Sobic005G188100--Sobic002G398901 Sobic010G204500 Sobic010G204500 Sobic005G188100--Sobic010G204500 Sobic009G166500 Sobic009G166500 Sobic005G188100--Sobic009G166500 Sobic005G188100--Sobic007G051000 Sobic006G047400 Sobic006G047400 Sobic005G188100--Sobic006G047400 Sobic005G188100--Sobic010G012500 Sobic005G188100--Sobic004G211833 Sobic007G051000--Sobic010G012500 Sobic007G051000--Sobic009G176000 Sobic007G051000--Sobic002G398901 Sobic007G051000--Sobic004G211833 Sobic007G051000--Sobic002G190900 Sobic006G083500 Sobic006G083500 Sobic007G051000--Sobic006G083500 Sobic001G018500 Sobic001G018500 Sobic007G051000--Sobic001G018500 Sobic003G209000 Sobic003G209000 Sobic007G051000--Sobic003G209000 Sobic007G051000--Sobic010G204500 Sobic002G398901--Sobic002G190900 Sobic002G398901--Sobic010G012500 Sobic002G398901--Sobic009G176000 Sobic002G398901--Sobic007G051000 Sobic002G398901--Sobic004G211833 Sobic002G398901--Sobic002G081600 Sobic002G418400 Sobic002G418400 Sobic002G398901--Sobic002G418400 Sobic002G398901--Sobic006G083500 Sobic009G215200 Sobic009G215200 Sobic002G398901--Sobic009G215200 Sobic002G356400 Sobic002G356400 Sobic009G119900--Sobic002G356400 Sobic009G119900--Sobic003G209000 Sobic004G310300 Sobic004G310300 Sobic009G119900--Sobic004G310300 Sobic004G170400 Sobic004G170400 Sobic009G119900--Sobic004G170400 Sobic004G259200 Sobic004G259200 Sobic009G119900--Sobic004G259200 Sobic009G119900--Sobic007G051000 Sobic001G172000 Sobic001G172000 Sobic009G119900--Sobic001G172000 Sobic009G119900--Sobic006G083500 Sobic009G119900--Sobic010G154700 Sobic008G129400 Sobic008G129400 Sobic010G018400--Sobic008G129400 Sobic003G368500 Sobic003G368500 Sobic010G018400--Sobic003G368500 Sobic010G018400--Sobic003G155400 Sobic010G018400--Sobic009G176000 Sobic010G018400--Sobic007G051000 Sobic010G018400--Sobic010G154700 Sobic010G018400--Sobic001G132100 Sobic010G018400--Sobic001G048832 Sobic001G445800 Sobic001G445800 Sobic010G018400--Sobic001G445800 Sobic002G267500 Sobic002G267500 Sobic004G272800--Sobic002G267500 Sobic004G272800--Sobic001G281400 Sobic003G253000 Sobic003G253000 Sobic004G272800--Sobic003G253000 Sobic004G272800--Sobic001G048832 Sobic004G272800--Sobic002G190900 Sobic002G345300 Sobic002G345300 Sobic004G272800--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic004G272800--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic004G272800--Sobic010G041600 Sobic004G272800--Sobic005G188100
Octagon: transcription factors


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