Gene annotation
Transcriptome id Sobic.004G272800.7,Sobic.004G272800.4,Sobic.004G272800.6,Sobic.004G272800.5
Synonym Sb04g031020
Functional annotation VHS and GAT domain containing protein, expressed
UniProt A0A194YRU4
Pfam PF03127 PF00790
Panther DB PTHR13856 PTHR13856:SF93
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006886; intracellular protein transport GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT5G16880 : Target of Myb protein 1
RAP-DB (Rice) LOC_Os02g46962.1,LOC_Os02g46962.3,LOC_Os02g46962.2 : VHS and GAT domain containing protein, expressed
MaizeGDB (Corn) Zm00025a032400 , Zm00025a021644
Brachypodium KQJ81548 , KQJ81549 , KQK00871
Barley HORVU0Hr1G018200.1 , HORVU2Hr1G001790.3 , HORVU2Hr1G001790.2 , HORVU2Hr1G001790.7 , HORVU2Hr1G001790.6 , HORVU2Hr1G001790.5 , HORVU2Hr1G001790.4 , HORVU2Hr1G001790.9 , HORVU2Hr1G001790.8 , HORVU2Hr1G001790.12 , HORVU2Hr1G001790.11 , HORVU2Hr1G001790.10
Wheat TraesCS2A02G011100 , TraesCS6A02G266600 , TraesCS2D02G011800 , TraesCS6B02G294000 , TraesCS6D02G248100 , TraesCS2B02G010400
Populus -


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cDNA sequences
Sobic.004G272800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
2 Sobic.001G281400 expressed protein -
3 Sobic.003G253000 ubiquitin-conjugating enzyme, putative, expressed K10580: UBE2N, BLU, ubiquitin-conjugating enzyme E2 N
4 Sobic.001G048832 - -
5 Sobic.002G190900 expressed protein -
6 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
7 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
8 Sobic.010G041600 profilin domain containing protein, expressed K05759: profilin
9 Sobic.005G188100 peptidase, T1 family, putative, expressed K02729: 20S proteasome subunit alpha 5
10 Sobic.010G154700 - -
11 Sobic.001G459200 MYB family transcription factor, putative, expressed -
12 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
13 Sobic.001G132100 expressed protein -
14 Sobic.008G189300 ubiquitin-conjugating enzyme E2 W, putative, expressed K10688: UBE2W, ubiquitin-conjugating enzyme E2 W
15 Sobic.008G185400 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
16 Sobic.004G276100 expressed protein -
17 Sobic.001G034700 actin-depolymerizing factor, putative, expressed K05765: cofilin
18 Sobic.004G284500 ORM1, putative, expressed -
19 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
20 Sobic.004G225500 bolA, putative, expressed K05527: BolA family transcriptional regulator, general stress-responsive regulator


Gene co-expression network
sample Sobic004G272800 Sobic004G272800 Sobic002G267500 Sobic002G267500 Sobic004G272800--Sobic002G267500 Sobic001G281400 Sobic001G281400 Sobic004G272800--Sobic001G281400 Sobic003G253000 Sobic003G253000 Sobic004G272800--Sobic003G253000 Sobic001G048832 Sobic001G048832 Sobic004G272800--Sobic001G048832 Sobic002G190900 Sobic002G190900 Sobic004G272800--Sobic002G190900 Sobic002G345300 Sobic002G345300 Sobic004G272800--Sobic002G345300 Sobic002G046100 Sobic002G046100 Sobic004G272800--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic004G272800--Sobic010G041600 Sobic005G188100 Sobic005G188100 Sobic004G272800--Sobic005G188100 Sobic002G267500--Sobic001G281400 Sobic002G267500--Sobic004G272800 Sobic002G267500--Sobic002G046100 Sobic002G267500--Sobic003G253000 Sobic010G149300 Sobic010G149300 Sobic002G267500--Sobic010G149300 Sobic002G267500--Sobic002G345300 Sobic001G459200 Sobic001G459200 Sobic002G267500--Sobic001G459200 Sobic009G143400 Sobic009G143400 Sobic002G267500--Sobic009G143400 Sobic006G173900 Sobic006G173900 Sobic002G267500--Sobic006G173900 Sobic004G187900 Sobic004G187900 Sobic001G281400--Sobic004G187900 Sobic001G281400--Sobic002G267500 Sobic001G281400--Sobic010G149300 Sobic001G281400--Sobic002G190900 Sobic001G281400--Sobic002G046100 Sobic010G086200 Sobic010G086200 Sobic001G281400--Sobic010G086200 Sobic009G141800 Sobic009G141800 Sobic001G281400--Sobic009G141800 Sobic009G008900 Sobic009G008900 Sobic001G281400--Sobic009G008900 Sobic001G499300 Sobic001G499300 Sobic001G281400--Sobic001G499300 Sobic006G141500 Sobic006G141500 Sobic003G253000--Sobic006G141500 Sobic004G049900 Sobic004G049900 Sobic003G253000--Sobic004G049900 Sobic003G253000--Sobic002G267500 Sobic003G253000--Sobic004G272800 Sobic003G253000--Sobic001G459200 Sobic003G253000--Sobic002G345300 Sobic003G253000--Sobic002G046100 Sobic009G185800 Sobic009G185800 Sobic003G253000--Sobic009G185800 Sobic006G108400 Sobic006G108400 Sobic003G253000--Sobic006G108400 Sobic010G154700 Sobic010G154700 Sobic001G048832--Sobic010G154700 Sobic001G132100 Sobic001G132100 Sobic001G048832--Sobic001G132100 Sobic007G051000 Sobic007G051000 Sobic001G048832--Sobic007G051000 Sobic009G176000 Sobic009G176000 Sobic001G048832--Sobic009G176000 Sobic001G048832--Sobic005G188100 Sobic001G048832--Sobic002G190900 Sobic009G119900 Sobic009G119900 Sobic001G048832--Sobic009G119900 Sobic001G048832--Sobic004G272800 Sobic002G398901 Sobic002G398901 Sobic001G048832--Sobic002G398901 Sobic002G190900--Sobic002G398901 Sobic010G012500 Sobic010G012500 Sobic002G190900--Sobic010G012500 Sobic002G190900--Sobic007G051000 Sobic002G190900--Sobic009G176000 Sobic002G081600 Sobic002G081600 Sobic002G190900--Sobic002G081600 Sobic002G190900--Sobic005G188100 Sobic002G190900--Sobic001G281400 Sobic004G211833 Sobic004G211833 Sobic002G190900--Sobic004G211833 Sobic001G374700 Sobic001G374700 Sobic002G190900--Sobic001G374700 Sobic002G345300--Sobic002G046100 Sobic003G350300 Sobic003G350300 Sobic002G345300--Sobic003G350300 Sobic002G345300--Sobic001G281400 Sobic010G178200 Sobic010G178200 Sobic002G345300--Sobic010G178200 Sobic002G345300--Sobic002G267500 Sobic002G345300--Sobic003G253000 Sobic003G285800 Sobic003G285800 Sobic002G345300--Sobic003G285800 Sobic002G345300--Sobic004G272800 Sobic002G345300--Sobic010G149300 Sobic002G046100--Sobic003G285800 Sobic002G046100--Sobic001G281400 Sobic002G046100--Sobic002G345300 Sobic002G187500 Sobic002G187500 Sobic002G046100--Sobic002G187500 Sobic002G046100--Sobic010G086200 Sobic004G061200 Sobic004G061200 Sobic002G046100--Sobic004G061200 Sobic001G477300 Sobic001G477300 Sobic002G046100--Sobic001G477300 Sobic002G046100--Sobic002G267500 Sobic002G046100--Sobic002G190900 Sobic001G034700 Sobic001G034700 Sobic010G041600--Sobic001G034700 Sobic010G041600--Sobic001G281400 Sobic010G041600--Sobic004G272800 Sobic010G041600--Sobic002G190900 Sobic008G185400 Sobic008G185400 Sobic010G041600--Sobic008G185400 Sobic001G086300 Sobic001G086300 Sobic010G041600--Sobic001G086300 Sobic010G041600--Sobic010G178200 Sobic008G129400 Sobic008G129400 Sobic010G041600--Sobic008G129400 Sobic010G041600--Sobic007G051000 Sobic005G188100--Sobic002G190900 Sobic009G163800 Sobic009G163800 Sobic005G188100--Sobic009G163800 Sobic005G188100--Sobic002G398901 Sobic010G204500 Sobic010G204500 Sobic005G188100--Sobic010G204500 Sobic009G166500 Sobic009G166500 Sobic005G188100--Sobic009G166500 Sobic005G188100--Sobic007G051000 Sobic006G047400 Sobic006G047400 Sobic005G188100--Sobic006G047400 Sobic005G188100--Sobic010G012500 Sobic005G188100--Sobic004G211833
Octagon: transcription factors


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