Gene annotation
Transcriptome id Sobic.008G185400.2,Sobic.008G185400.3,Sobic.008G185400.1
Synonym RAB5A, RABF2A, ATRABF2A, RHA1, RAB-F2A, ATRAB-F2A, Sb08g022680, ATRAB5A
Functional annotation ras-related protein, putative, expressed
UniProt A0A1B6PEJ9 , A0A1B6PEI1
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF570
NCBI CDD KOG0092; GTPase Rab5/YPT51 and related small G protein superfamily GTPases
KEGG Orthology K07889; Ras-related protein Rab-5C
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT4G19640 : RAB homolog 1,Ras-related small GTP-binding family protein
RAP-DB (Rice) LOC_Os03g46390.1,LOC_Os12g43550.2 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a057073 , Zm00025a008978 , Zm00025a004832
Brachypodium KQK13854 , KQK13855
Barley HORVU5Hr1G120210.3 , HORVU5Hr1G120210.2 , HORVU5Hr1G120210.1 , HORVU5Hr1G120210.4 , HORVU1Hr1G001920.3 , HORVU1Hr1G001920.2 , HORVU1Hr1G001920.1 , HORVU5Hr1G002970.9 , HORVU5Hr1G002970.8 , HORVU5Hr1G002970.5 , HORVU5Hr1G002970.4 , HORVU5Hr1G002970.7 , HORVU5Hr1G002970.6 , HORVU5Hr1G002970.1 , HORVU5Hr1G002970.3 , HORVU5Hr1G002970.2
Wheat TraesCS1A02G015400 , TraesCS4A02G343500 , TraesCS5D02G529500 , TraesCS1B02G018900 , TraesCS1D02G013300 , TraesCS5B02G014400 , TraesCS5B02G530800 , TraesCS5D02G022200 , TraesCS5D02G022200
Populus -


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cDNA sequences
Sobic.008G185400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
2 Sobic.010G041600 profilin domain containing protein, expressed K05759: profilin
3 Sobic.003G285800 ubiquitin domain-containing protein 1, putative, expressed -
4 Sobic.006G143400 expressed protein -
5 Sobic.001G034700 actin-depolymerizing factor, putative, expressed K05765: cofilin
6 Sobic.004G272800 VHS and GAT domain containing protein, expressed -
7 Sobic.002G187500 hypoxia-responsive family protein, putative, expressed -
8 Sobic.002G190900 expressed protein -
9 Sobic.001G281400 expressed protein -
10 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
11 Sobic.001G445800 expressed protein -
12 Sobic.002G267500 hydrolase, alpha/beta fold family domain containing protein, expressed -
13 Sobic.001G067601 - K17553: protein phosphatase 1 regulatory subunit 11
14 Sobic.010G086200 GRAM domain containing protein, expressed -
15 Sobic.002G345300 ZOS7-05 - C2H2 zinc finger protein, expressed -
16 Sobic.006G182100 ORM1, putative, expressed -
17 Sobic.010G178200 hemoglobin-like protein HbO, putative, expressed -
18 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
19 Sobic.003G155400 miro, putative, expressed K07953: GTP-binding protein SAR1
20 Sobic.002G312400 domain of unknown function domain containing protein, expressed -


Gene co-expression network
sample Sobic008G185400 Sobic008G185400 Sobic002G046100 Sobic002G046100 Sobic008G185400--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic008G185400--Sobic010G041600 Sobic003G285800 Sobic003G285800 Sobic008G185400--Sobic003G285800 Sobic006G143400 Sobic006G143400 Sobic008G185400--Sobic006G143400 Sobic001G034700 Sobic001G034700 Sobic008G185400--Sobic001G034700 Sobic004G272800 Sobic004G272800 Sobic008G185400--Sobic004G272800 Sobic002G187500 Sobic002G187500 Sobic008G185400--Sobic002G187500 Sobic002G190900 Sobic002G190900 Sobic008G185400--Sobic002G190900 Sobic001G281400 Sobic001G281400 Sobic008G185400--Sobic001G281400 Sobic002G046100--Sobic003G285800 Sobic002G046100--Sobic001G281400 Sobic002G345300 Sobic002G345300 Sobic002G046100--Sobic002G345300 Sobic002G046100--Sobic002G187500 Sobic010G086200 Sobic010G086200 Sobic002G046100--Sobic010G086200 Sobic004G061200 Sobic004G061200 Sobic002G046100--Sobic004G061200 Sobic001G477300 Sobic001G477300 Sobic002G046100--Sobic001G477300 Sobic002G267500 Sobic002G267500 Sobic002G046100--Sobic002G267500 Sobic002G046100--Sobic002G190900 Sobic010G041600--Sobic001G034700 Sobic010G041600--Sobic001G281400 Sobic010G041600--Sobic004G272800 Sobic010G041600--Sobic002G190900 Sobic010G041600--Sobic008G185400 Sobic001G086300 Sobic001G086300 Sobic010G041600--Sobic001G086300 Sobic010G178200 Sobic010G178200 Sobic010G041600--Sobic010G178200 Sobic008G129400 Sobic008G129400 Sobic010G041600--Sobic008G129400 Sobic007G051000 Sobic007G051000 Sobic010G041600--Sobic007G051000 Sobic003G285800--Sobic002G046100 Sobic003G285800--Sobic002G187500 Sobic003G285800--Sobic010G178200 Sobic003G350300 Sobic003G350300 Sobic003G285800--Sobic003G350300 Sobic003G285800--Sobic002G345300 Sobic003G285800--Sobic001G477300 Sobic003G285800--Sobic001G281400 Sobic003G285800--Sobic010G086200 Sobic009G129000 Sobic009G129000 Sobic003G285800--Sobic009G129000 Sobic005G005600 Sobic005G005600 Sobic006G143400--Sobic005G005600 Sobic003G041600 Sobic003G041600 Sobic006G143400--Sobic003G041600 Sobic009G159400 Sobic009G159400 Sobic006G143400--Sobic009G159400 Sobic010G259600 Sobic010G259600 Sobic006G143400--Sobic010G259600 Sobic006G143400--Sobic008G185400 Sobic004G075000 Sobic004G075000 Sobic006G143400--Sobic004G075000 Sobic003G364300 Sobic003G364300 Sobic006G143400--Sobic003G364300 Sobic007G166000 Sobic007G166000 Sobic006G143400--Sobic007G166000 Sobic001G449600 Sobic001G449600 Sobic006G143400--Sobic001G449600 Sobic001G034700--Sobic010G041600 Sobic001G034700--Sobic001G086300 Sobic001G048832 Sobic001G048832 Sobic001G034700--Sobic001G048832 Sobic009G176000 Sobic009G176000 Sobic001G034700--Sobic009G176000 Sobic001G034700--Sobic007G051000 Sobic005G188100 Sobic005G188100 Sobic001G034700--Sobic005G188100 Sobic001G034700--Sobic003G285800 Sobic001G034700--Sobic010G178200 Sobic003G150000 Sobic003G150000 Sobic001G034700--Sobic003G150000 Sobic004G272800--Sobic002G267500 Sobic004G272800--Sobic001G281400 Sobic003G253000 Sobic003G253000 Sobic004G272800--Sobic003G253000 Sobic004G272800--Sobic001G048832 Sobic004G272800--Sobic002G190900 Sobic004G272800--Sobic002G345300 Sobic004G272800--Sobic002G046100 Sobic004G272800--Sobic010G041600 Sobic004G272800--Sobic005G188100 Sobic010G009300 Sobic010G009300 Sobic002G187500--Sobic010G009300 Sobic002G187500--Sobic003G285800 Sobic002G187500--Sobic002G190900 Sobic002G187500--Sobic002G046100 Sobic003G072300 Sobic003G072300 Sobic002G187500--Sobic003G072300 Sobic001G177800 Sobic001G177800 Sobic002G187500--Sobic001G177800 Sobic002G081600 Sobic002G081600 Sobic002G187500--Sobic002G081600 Sobic002G187500--Sobic001G281400 Sobic003G393700 Sobic003G393700 Sobic002G187500--Sobic003G393700 Sobic002G398901 Sobic002G398901 Sobic002G190900--Sobic002G398901 Sobic010G012500 Sobic010G012500 Sobic002G190900--Sobic010G012500 Sobic002G190900--Sobic007G051000 Sobic002G190900--Sobic009G176000 Sobic002G190900--Sobic002G081600 Sobic002G190900--Sobic005G188100 Sobic002G190900--Sobic001G281400 Sobic004G211833 Sobic004G211833 Sobic002G190900--Sobic004G211833 Sobic001G374700 Sobic001G374700 Sobic002G190900--Sobic001G374700 Sobic004G187900 Sobic004G187900 Sobic001G281400--Sobic004G187900 Sobic001G281400--Sobic002G267500 Sobic010G149300 Sobic010G149300 Sobic001G281400--Sobic010G149300 Sobic001G281400--Sobic002G190900 Sobic001G281400--Sobic002G046100 Sobic001G281400--Sobic010G086200 Sobic009G141800 Sobic009G141800 Sobic001G281400--Sobic009G141800 Sobic009G008900 Sobic009G008900 Sobic001G281400--Sobic009G008900 Sobic001G499300 Sobic001G499300 Sobic001G281400--Sobic001G499300
Octagon: transcription factors


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