Gene annotation
Transcriptome id Sobic.006G143400.1
Synonym Sb06g022260
Functional annotation expressed protein
UniProt C5YBZ3
Pfam -
Panther DB PTHR26312 PTHR26312:SF84
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G20190 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os04g43160.1 : expressed protein
MaizeGDB (Corn) Zm00025a000563 , Zm00025a010672
Brachypodium KQJ83519
Barley HORVU2Hr1G088520.10 , HORVU2Hr1G088520.9 , HORVU2Hr1G088520.8 , HORVU2Hr1G088520.3 , HORVU2Hr1G088520.2 , HORVU2Hr1G088520.1 , HORVU2Hr1G088520.7 , HORVU2Hr1G088520.6 , HORVU2Hr1G088520.5
Wheat TraesCS2A02G367000 , TraesCS2B02G384500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G005600 prenylated rab acceptor, putative, expressed -
2 Sobic.003G041600 DUF623 domain containing protein, expressed -
3 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
4 Sobic.010G259600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed -
5 Sobic.008G185400 ras-related protein, putative, expressed K07889: Ras-related protein Rab-5C
6 Sobic.004G075000 expressed protein -
7 Sobic.003G364300 similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
8 Sobic.007G166000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS8-14 - C2H2 zinc finger protein, expressed -
9 Sobic.001G449600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@non-symbiotic hemoglobin 2, putative, expressed -
10 Sobic.002G302500 -(PubMedID : 29147737)@serine/threonine-protein kinase receptor precursor, putative, expressed -
11 Sobic.004G340900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX70 - F-box domain containing protein, expressed -
12 Sobic.007G087200 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
13 Sobic.003G041200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.009G221400 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
15 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
16 Sobic.001G091600 expressed protein -
17 Sobic.004G208700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CHIT1 - Chitinase family protein precursor, expressed K01183: chitinase
18 Sobic.007G155000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
19 Sobic.010G156500 expressed protein -
20 Sobic.002G353900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -


Gene co-expression network
sample Sobic006G143400 Sobic006G143400 Sobic005G005600 Sobic005G005600 Sobic006G143400--Sobic005G005600 Sobic003G041600 Sobic003G041600 Sobic006G143400--Sobic003G041600 Sobic009G159400 Sobic009G159400 Sobic006G143400--Sobic009G159400 Sobic010G259600 Sobic010G259600 Sobic006G143400--Sobic010G259600 Sobic008G185400 Sobic008G185400 Sobic006G143400--Sobic008G185400 Sobic004G075000 Sobic004G075000 Sobic006G143400--Sobic004G075000 Sobic003G364300 Sobic003G364300 Sobic006G143400--Sobic003G364300 Sobic007G166000 Sobic007G166000 Sobic006G143400--Sobic007G166000 Sobic001G449600 Sobic001G449600 Sobic006G143400--Sobic001G449600 Sobic003G319700 Sobic003G319700 Sobic005G005600--Sobic003G319700 Sobic005G005600--Sobic001G449600 Sobic005G005600--Sobic006G143400 Sobic009G217700 Sobic009G217700 Sobic005G005600--Sobic009G217700 Sobic005G213500 Sobic005G213500 Sobic005G005600--Sobic005G213500 Sobic005G005600--Sobic007G166000 Sobic003G364000 Sobic003G364000 Sobic005G005600--Sobic003G364000 Sobic001G433900 Sobic001G433900 Sobic005G005600--Sobic001G433900 Sobic009G139700 Sobic009G139700 Sobic005G005600--Sobic009G139700 Sobic009G221400 Sobic009G221400 Sobic003G041600--Sobic009G221400 Sobic008G044300 Sobic008G044300 Sobic003G041600--Sobic008G044300 Sobic003G041600--Sobic006G143400 Sobic009G069800 Sobic009G069800 Sobic003G041600--Sobic009G069800 Sobic003G041600--Sobic003G364300 Sobic001G091600 Sobic001G091600 Sobic003G041600--Sobic001G091600 Sobic010G166500 Sobic010G166500 Sobic003G041600--Sobic010G166500 Sobic001G477600 Sobic001G477600 Sobic003G041600--Sobic001G477600 Sobic010G156500 Sobic010G156500 Sobic003G041600--Sobic010G156500 Sobic001G038900 Sobic001G038900 Sobic009G159400--Sobic001G038900 Sobic001G435000 Sobic001G435000 Sobic009G159400--Sobic001G435000 Sobic004G321300 Sobic004G321300 Sobic009G159400--Sobic004G321300 Sobic003G345100 Sobic003G345100 Sobic009G159400--Sobic003G345100 Sobic004G208700 Sobic004G208700 Sobic009G159400--Sobic004G208700 Sobic001G140900 Sobic001G140900 Sobic009G159400--Sobic001G140900 Sobic008G050600 Sobic008G050600 Sobic009G159400--Sobic008G050600 Sobic009G159400--Sobic010G259600 Sobic004G237800 Sobic004G237800 Sobic009G159400--Sobic004G237800 Sobic010G259600--Sobic009G159400 Sobic003G352300 Sobic003G352300 Sobic010G259600--Sobic003G352300 Sobic009G234100 Sobic009G234100 Sobic010G259600--Sobic009G234100 Sobic002G125700 Sobic002G125700 Sobic010G259600--Sobic002G125700 Sobic007G087200 Sobic007G087200 Sobic010G259600--Sobic007G087200 Sobic009G231000 Sobic009G231000 Sobic010G259600--Sobic009G231000 Sobic010G259600--Sobic001G435000 Sobic003G255200 Sobic003G255200 Sobic010G259600--Sobic003G255200 Sobic002G017800 Sobic002G017800 Sobic010G259600--Sobic002G017800 Sobic002G046100 Sobic002G046100 Sobic008G185400--Sobic002G046100 Sobic010G041600 Sobic010G041600 Sobic008G185400--Sobic010G041600 Sobic003G285800 Sobic003G285800 Sobic008G185400--Sobic003G285800 Sobic008G185400--Sobic006G143400 Sobic001G034700 Sobic001G034700 Sobic008G185400--Sobic001G034700 Sobic004G272800 Sobic004G272800 Sobic008G185400--Sobic004G272800 Sobic002G187500 Sobic002G187500 Sobic008G185400--Sobic002G187500 Sobic002G190900 Sobic002G190900 Sobic008G185400--Sobic002G190900 Sobic001G281400 Sobic001G281400 Sobic008G185400--Sobic001G281400 Sobic007G155000 Sobic007G155000 Sobic004G075000--Sobic007G155000 Sobic002G393000 Sobic002G393000 Sobic004G075000--Sobic002G393000 Sobic004G075000--Sobic001G038900 Sobic003G364600 Sobic003G364600 Sobic004G075000--Sobic003G364600 Sobic004G061200 Sobic004G061200 Sobic004G075000--Sobic004G061200 Sobic004G075000--Sobic009G159400 Sobic004G075000--Sobic001G477600 Sobic004G075000--Sobic006G143400 Sobic003G393700 Sobic003G393700 Sobic004G075000--Sobic003G393700 Sobic003G364300--Sobic010G156500 Sobic003G364300--Sobic009G231000 Sobic002G338500 Sobic002G338500 Sobic003G364300--Sobic002G338500 Sobic003G364300--Sobic003G364000 Sobic007G008100 Sobic007G008100 Sobic003G364300--Sobic007G008100 Sobic002G042000 Sobic002G042000 Sobic003G364300--Sobic002G042000 Sobic003G382600 Sobic003G382600 Sobic003G364300--Sobic003G382600 Sobic001G054500 Sobic001G054500 Sobic003G364300--Sobic001G054500 Sobic002G302500 Sobic002G302500 Sobic003G364300--Sobic002G302500 Sobic007G166000--Sobic001G449600 Sobic009G164600 Sobic009G164600 Sobic007G166000--Sobic009G164600 Sobic007G166000--Sobic005G005600 Sobic007G166000--Sobic009G139700 Sobic007G166000--Sobic010G259600 Sobic007G166000--Sobic006G143400 Sobic007G166000--Sobic009G217700 Sobic007G166000--Sobic009G231000 Sobic007G005700 Sobic007G005700 Sobic007G166000--Sobic007G005700 Sobic001G449600--Sobic009G217700 Sobic001G449600--Sobic003G255200 Sobic001G449600--Sobic005G005600 Sobic001G449600--Sobic003G319700 Sobic001G449600--Sobic007G166000 Sobic001G449600--Sobic002G125700 Sobic002G034800 Sobic002G034800 Sobic001G449600--Sobic002G034800 Sobic003G255500 Sobic003G255500 Sobic001G449600--Sobic003G255500 Sobic009G016300 Sobic009G016300 Sobic001G449600--Sobic009G016300
Octagon: transcription factors


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