Gene annotation
Transcriptome id Sobic.004G208700.1
Synonym ATCHITIV, EP3, Sb04g025430, ATEP3, CHIV
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CHIT1 - Chitinase family protein precursor, expressed
UniProt C5XX83
Pfam PF00187 PF00182
Panther DB PTHR22595 PTHR22595:SF60
NCBI CDD KOG4742; Predicted chitinase
KEGG Orthology K01183; chitinase
Gene Ontology GO:0008061; chitin binding GO:0016998cell wall macromolecule catabolic process GO:0006032chitin catabolic process GO:0004568chitinase activity


Orthologs (automatic annotation)
TAIR AT3G54420 : homolog of carrot EP3-3 chitinase
RAP-DB (Rice) LOC_Os02g39330.1 : CHIT1 - Chitinase family protein precursor, expressed
MaizeGDB (Corn) Zm00025a036179 , Zm00025a021247 , Zm00025a010855 , Zm00025a010854 , Zm00025a010853 , Zm00025a056371
Brachypodium KQK00253
Barley HORVU0Hr1G016310.1 , HORVU0Hr1G016310.3 , HORVU0Hr1G016310.2 , HORVU0Hr1G016310.4
Wheat TraesCS6A02G216100 , TraesCS6B02G246800 , TraesCS6D02G199500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G234100 WRKY49, expressed -
2 Sobic.001G435000 gibberellin receptor GID1L2, putative, expressed -
3 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
4 Sobic.003G286600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
5 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
6 Sobic.009G164600 ZOS1-14 - C2H2 zinc finger protein, expressed -
7 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
8 Sobic.005G063100 expressed protein -
9 Sobic.007G155000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
10 Sobic.005G099000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed -
11 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
12 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
13 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
14 Sobic.004G229800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 2, putative, expressed -
15 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
16 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
17 Sobic.003G382600 ARGOS, putative, expressed -
18 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
19 Sobic.010G176600 - -
20 Sobic.007G074000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- -


Gene co-expression network
sample Sobic004G208700 Sobic004G208700 Sobic009G234100 Sobic009G234100 Sobic004G208700--Sobic009G234100 Sobic001G435000 Sobic001G435000 Sobic004G208700--Sobic001G435000 Sobic003G345100 Sobic003G345100 Sobic004G208700--Sobic003G345100 Sobic003G286600 Sobic003G286600 Sobic004G208700--Sobic003G286600 Sobic008G050600 Sobic008G050600 Sobic004G208700--Sobic008G050600 Sobic009G164600 Sobic009G164600 Sobic004G208700--Sobic009G164600 Sobic009G159400 Sobic009G159400 Sobic004G208700--Sobic009G159400 Sobic005G063100 Sobic005G063100 Sobic004G208700--Sobic005G063100 Sobic007G155000 Sobic007G155000 Sobic004G208700--Sobic007G155000 Sobic009G234100--Sobic004G208700 Sobic009G234100--Sobic005G063100 Sobic009G234100--Sobic003G345100 Sobic009G234100--Sobic003G286600 Sobic009G234100--Sobic001G435000 Sobic009G234100--Sobic008G050600 Sobic005G099000 Sobic005G099000 Sobic009G234100--Sobic005G099000 Sobic009G234100--Sobic007G155000 Sobic010G259600 Sobic010G259600 Sobic009G234100--Sobic010G259600 Sobic001G435000--Sobic004G208700 Sobic004G229800 Sobic004G229800 Sobic001G435000--Sobic004G229800 Sobic001G435000--Sobic009G159400 Sobic001G435000--Sobic007G155000 Sobic001G435000--Sobic003G345100 Sobic001G435000--Sobic005G063100 Sobic001G435000--Sobic005G099000 Sobic001G435000--Sobic008G050600 Sobic001G140900 Sobic001G140900 Sobic001G435000--Sobic001G140900 Sobic003G345100--Sobic008G050600 Sobic003G345100--Sobic005G063100 Sobic003G345100--Sobic009G164600 Sobic003G345100--Sobic001G140900 Sobic003G345100--Sobic004G208700 Sobic003G345100--Sobic005G099000 Sobic003G345100--Sobic009G159400 Sobic003G369100 Sobic003G369100 Sobic003G345100--Sobic003G369100 Sobic003G345100--Sobic001G435000 Sobic010G176600 Sobic010G176600 Sobic003G286600--Sobic010G176600 Sobic003G286600--Sobic008G050600 Sobic003G286600--Sobic005G063100 Sobic006G099900 Sobic006G099900 Sobic003G286600--Sobic006G099900 Sobic003G286600--Sobic004G208700 Sobic002G140400 Sobic002G140400 Sobic003G286600--Sobic002G140400 Sobic003G286600--Sobic003G345100 Sobic003G317100 Sobic003G317100 Sobic003G286600--Sobic003G317100 Sobic003G286600--Sobic009G164600 Sobic008G050600--Sobic003G345100 Sobic008G050600--Sobic001G140900 Sobic008G050600--Sobic005G063100 Sobic008G050600--Sobic003G286600 Sobic008G050600--Sobic009G164600 Sobic001G038900 Sobic001G038900 Sobic008G050600--Sobic001G038900 Sobic008G136400 Sobic008G136400 Sobic008G050600--Sobic008G136400 Sobic004G189400 Sobic004G189400 Sobic008G050600--Sobic004G189400 Sobic005G051200 Sobic005G051200 Sobic008G050600--Sobic005G051200 Sobic009G164600--Sobic003G345100 Sobic009G164600--Sobic008G050600 Sobic009G164600--Sobic005G051200 Sobic009G164600--Sobic004G208700 Sobic009G164600--Sobic003G286600 Sobic009G164600--Sobic005G063100 Sobic009G164600--Sobic001G140900 Sobic009G164600--Sobic009G234100 Sobic009G164600--Sobic001G435000 Sobic009G159400--Sobic001G038900 Sobic009G159400--Sobic001G435000 Sobic004G321300 Sobic004G321300 Sobic009G159400--Sobic004G321300 Sobic009G159400--Sobic003G345100 Sobic009G159400--Sobic004G208700 Sobic009G159400--Sobic001G140900 Sobic009G159400--Sobic008G050600 Sobic009G159400--Sobic010G259600 Sobic004G237800 Sobic004G237800 Sobic009G159400--Sobic004G237800 Sobic005G063100--Sobic008G050600 Sobic005G063100--Sobic003G345100 Sobic005G063100--Sobic003G286600 Sobic005G063100--Sobic001G140900 Sobic005G063100--Sobic005G099000 Sobic005G063100--Sobic009G234100 Sobic005G091500 Sobic005G091500 Sobic005G063100--Sobic005G091500 Sobic005G063100--Sobic004G208700 Sobic005G063100--Sobic001G435000 Sobic007G155000--Sobic001G435000 Sobic007G155000--Sobic004G208700 Sobic007G155000--Sobic009G234100 Sobic007G155000--Sobic009G159400 Sobic007G155000--Sobic002G140400 Sobic007G155000--Sobic004G229800 Sobic007G155000--Sobic001G038900 Sobic010G066700 Sobic010G066700 Sobic007G155000--Sobic010G066700 Sobic007G155000--Sobic010G259600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.