Gene annotation
Transcriptome id Sobic.001G038900.1
Synonym Sb01g003580
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
DUF567 domain containing protein, putative, expressed
UniProt C5WV55
Pfam PF04525
Panther DB PTHR31087 PTHR31087:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G01750 : Protein of unknown function (DUF567)
RAP-DB (Rice) LOC_Os03g60220.1 : DUF567 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a029683 , Zm00025a008756
Brachypodium KQK12487
Barley HORVU5Hr1G114820.3 , HORVU5Hr1G114820.1 , HORVU0Hr1G013780.1 , HORVU3Hr1G021610.46 , HORVU3Hr1G021610.44 , HORVU3Hr1G021610.42 , HORVU3Hr1G021610.41 , HORVU5Hr1G095240.1 , HORVU3Hr1G021610.39 , HORVU3Hr1G021610.38 , HORVU3Hr1G021610.33 , HORVU3Hr1G021610.32 , HORVU3Hr1G021610.31 , HORVU3Hr1G021610.30 , HORVU3Hr1G021610.37 , HORVU3Hr1G021610.36 , HORVU3Hr1G021610.35 , HORVU3Hr1G021610.34 , HORVU3Hr1G021610.19 , HORVU3Hr1G021610.18 , HORVU3Hr1G021610.45 , HORVU3Hr1G021610.43 , HORVU3Hr1G021610.40 , HORVU3Hr1G021610.28 , HORVU3Hr1G021610.29 , HORVU3Hr1G021610.20 , HORVU3Hr1G021610.22 , HORVU3Hr1G021610.23 , HORVU3Hr1G021610.25 , HORVU5Hr1G010790.8 , HORVU5Hr1G010790.9 , HORVU5Hr1G010790.6 , HORVU5Hr1G010790.7 , HORVU5Hr1G010790.4 , HORVU5Hr1G010790.5 , HORVU5Hr1G010790.2 , HORVU5Hr1G010790.3 , HORVU5Hr1G010790.1 , HORVU5Hr1G112100.4 , HORVU5Hr1G112100.5 , HORVU5Hr1G112100.2 , HORVU5Hr1G112100.3 , HORVU5Hr1G112100.1 , HORVU3Hr1G021610.15 , HORVU3Hr1G021610.14 , HORVU3Hr1G021610.17 , HORVU3Hr1G021610.16 , HORVU3Hr1G021610.11 , HORVU3Hr1G021610.10 , HORVU3Hr1G021610.13 , HORVU3Hr1G021610.12 , HORVU5Hr1G010790.10 , HORVU5Hr1G010790.11 , HORVU3Hr1G021610.9 , HORVU3Hr1G021610.8 , HORVU3Hr1G021610.1 , HORVU3Hr1G021610.3 , HORVU3Hr1G021610.2 , HORVU3Hr1G021610.5 , HORVU3Hr1G021610.4 , HORVU3Hr1G021610.7 , HORVU3Hr1G021610.6 , HORVU3Hr1G021610.21 , HORVU3Hr1G021610.24
Wheat TraesCS5B02G484000 , TraesCS5A02G471700 , TraesCS5D02G484000
Populus -


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cDNA sequences
Sobic.001G038900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.001G140900 helix-loop-helix DNA-binding protein, putative, expressed -
3 Sobic.008G136400 expressed protein -
4 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
5 Sobic.001G423800 DNA binding protein, putative, expressed -
6 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
7 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
8 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.004G189400 expressed protein -
10 Sobic.002G192000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AN1-like zinc finger domain containing protein, expressed -
11 Sobic.001G435000 gibberellin receptor GID1L2, putative, expressed -
12 Sobic.003G369100 AP2 domain containing protein, expressed -
13 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
14 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
15 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
16 Sobic.006G158600 short-chain dehydrogenase/reductase, putative, expressed K15095: (+)-neomenthol dehydrogenase
17 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
18 Sobic.002G188900 cytokinin-O-glucosyltransferase 1, putative, expressed -
19 Sobic.005G063100 expressed protein -
20 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase


Gene co-expression network
sample Sobic001G038900 Sobic001G038900 Sobic002G140400 Sobic002G140400 Sobic001G038900--Sobic002G140400 Sobic001G140900 Sobic001G140900 Sobic001G038900--Sobic001G140900 Sobic008G136400 Sobic008G136400 Sobic001G038900--Sobic008G136400 Sobic008G050600 Sobic008G050600 Sobic001G038900--Sobic008G050600 Sobic001G423800 Sobic001G423800 Sobic001G038900--Sobic001G423800 Sobic009G159400 Sobic009G159400 Sobic001G038900--Sobic009G159400 Sobic003G345100 Sobic003G345100 Sobic001G038900--Sobic003G345100 Sobic001G367600 Sobic001G367600 Sobic001G038900--Sobic001G367600 Sobic004G189400 Sobic004G189400 Sobic001G038900--Sobic004G189400 Sobic002G140400--Sobic001G038900 Sobic002G263400 Sobic002G263400 Sobic002G140400--Sobic002G263400 Sobic002G140400--Sobic004G189400 Sobic002G140400--Sobic001G423800 Sobic002G140400--Sobic008G136400 Sobic007G074000 Sobic007G074000 Sobic002G140400--Sobic007G074000 Sobic004G237800 Sobic004G237800 Sobic002G140400--Sobic004G237800 Sobic002G140400--Sobic008G050600 Sobic003G286600 Sobic003G286600 Sobic002G140400--Sobic003G286600 Sobic001G140900--Sobic008G050600 Sobic001G140900--Sobic003G345100 Sobic001G140900--Sobic001G038900 Sobic005G063100 Sobic005G063100 Sobic001G140900--Sobic005G063100 Sobic004G100700 Sobic004G100700 Sobic001G140900--Sobic004G100700 Sobic003G369100 Sobic003G369100 Sobic001G140900--Sobic003G369100 Sobic001G140900--Sobic001G367600 Sobic001G140900--Sobic008G136400 Sobic004G141200 Sobic004G141200 Sobic001G140900--Sobic004G141200 Sobic008G136400--Sobic001G038900 Sobic008G136400--Sobic008G050600 Sobic008G136400--Sobic002G140400 Sobic006G275200 Sobic006G275200 Sobic008G136400--Sobic006G275200 Sobic008G136400--Sobic001G140900 Sobic006G158600 Sobic006G158600 Sobic008G136400--Sobic006G158600 Sobic008G136400--Sobic004G189400 Sobic008G136400--Sobic001G423800 Sobic009G008900 Sobic009G008900 Sobic008G136400--Sobic009G008900 Sobic008G050600--Sobic003G345100 Sobic008G050600--Sobic001G140900 Sobic008G050600--Sobic005G063100 Sobic008G050600--Sobic003G286600 Sobic009G164600 Sobic009G164600 Sobic008G050600--Sobic009G164600 Sobic008G050600--Sobic001G038900 Sobic008G050600--Sobic008G136400 Sobic008G050600--Sobic004G189400 Sobic005G051200 Sobic005G051200 Sobic008G050600--Sobic005G051200 Sobic004G243100 Sobic004G243100 Sobic001G423800--Sobic004G243100 Sobic001G423800--Sobic002G140400 Sobic001G423800--Sobic001G038900 Sobic001G119400 Sobic001G119400 Sobic001G423800--Sobic001G119400 Sobic001G018300 Sobic001G018300 Sobic001G423800--Sobic001G018300 Sobic007G155100 Sobic007G155100 Sobic001G423800--Sobic007G155100 Sobic001G423800--Sobic008G136400 Sobic002G393000 Sobic002G393000 Sobic001G423800--Sobic002G393000 Sobic001G423800--Sobic004G189400 Sobic009G159400--Sobic001G038900 Sobic001G435000 Sobic001G435000 Sobic009G159400--Sobic001G435000 Sobic004G321300 Sobic004G321300 Sobic009G159400--Sobic004G321300 Sobic009G159400--Sobic003G345100 Sobic004G208700 Sobic004G208700 Sobic009G159400--Sobic004G208700 Sobic009G159400--Sobic001G140900 Sobic009G159400--Sobic008G050600 Sobic010G259600 Sobic010G259600 Sobic009G159400--Sobic010G259600 Sobic009G159400--Sobic004G237800 Sobic003G345100--Sobic008G050600 Sobic003G345100--Sobic005G063100 Sobic003G345100--Sobic009G164600 Sobic003G345100--Sobic001G140900 Sobic003G345100--Sobic004G208700 Sobic005G099000 Sobic005G099000 Sobic003G345100--Sobic005G099000 Sobic003G345100--Sobic009G159400 Sobic003G345100--Sobic003G369100 Sobic003G345100--Sobic001G435000 Sobic002G192000 Sobic002G192000 Sobic001G367600--Sobic002G192000 Sobic001G367600--Sobic001G140900 Sobic001G367600--Sobic001G038900 Sobic001G231700 Sobic001G231700 Sobic001G367600--Sobic001G231700 Sobic002G017800 Sobic002G017800 Sobic001G367600--Sobic002G017800 Sobic001G367600--Sobic004G100700 Sobic006G103000 Sobic006G103000 Sobic001G367600--Sobic006G103000 Sobic002G055700 Sobic002G055700 Sobic001G367600--Sobic002G055700 Sobic002G353900 Sobic002G353900 Sobic001G367600--Sobic002G353900 Sobic004G189400--Sobic002G140400 Sobic005G091500 Sobic005G091500 Sobic004G189400--Sobic005G091500 Sobic004G189400--Sobic002G263400 Sobic004G189400--Sobic008G050600 Sobic004G189400--Sobic004G237800 Sobic003G382600 Sobic003G382600 Sobic004G189400--Sobic003G382600 Sobic006G099900 Sobic006G099900 Sobic004G189400--Sobic006G099900 Sobic004G189400--Sobic008G136400 Sobic005G029200 Sobic005G029200 Sobic004G189400--Sobic005G029200
Octagon: transcription factors


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