Gene annotation
Transcriptome id Sobic.009G183400.1
Synonym PR2, PR-2, Sb09g024320, BG2, BGL2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
glycosyl hydrolases family 17, putative, expressed
UniProt A0A1Z5R476
Pfam PF00332
Panther DB PTHR32227 PTHR32227:SF50
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT3G57270 : beta-1,3-glucanase 1
RAP-DB (Rice) LOC_Os05g41610.1 : glycosyl hydrolases family 17, putative, expressed
MaizeGDB (Corn) Zm00025a036936 , Zm00025a039842 , Zm00025a044100 , Zm00025a037858
Brachypodium KQK10191 , KQK11484 , KQK19723 , KQK05606
Barley HORVU3Hr1G078520.1 , HORVU3Hr1G078520.3 , HORVU3Hr1G078520.2 , HORVU1Hr1G067460.6 , HORVU1Hr1G067460.4 , HORVU1Hr1G067460.5 , HORVU1Hr1G067460.2 , HORVU1Hr1G067460.1 , HORVU1Hr1G067460.3 , HORVU0Hr1G031580.1
Wheat TraesCS3A02G330500 , TraesCS3B02G360500 , TraesCS3B02G360500 , TraesCS3B02G529100 , TraesCS1A02G312700 , TraesCS1A02G312700 , TraesCS3D02G477700 , TraesCS1D02G312800 , TraesCS1D02G312800 , TraesCS1B02G324300 , TraesCS1B02G324300 , TraesCS3D02G478900 , TraesCS3D02G323900 , TraesCS3B02G530600
Populus -


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cDNA sequences
Sobic.009G183400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G476500 helix-loop-helix DNA-binding protein, putative, expressed -
2 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
3 Sobic.006G092500 expressed protein -
4 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
5 Sobic.001G097600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@"salidroside biosynthesis, ethanol degradation II, phytol degradation"(PubMedID : 21853065)@dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P
6 Sobic.009G061200 universal stress protein domain containing protein, putative, expressed -
7 Sobic.002G414600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hypoxia-responsive family protein, putative, expressed -
8 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
9 Sobic.001G140900 helix-loop-helix DNA-binding protein, putative, expressed -
10 Sobic.003G417800 down-regulated TF in developmental senescence(PubMedID : 27586543)@histone-like transcription factor and archaeal histone, putative, expressed -
11 Sobic.002G188900 cytokinin-O-glucosyltransferase 1, putative, expressed -
12 Sobic.001G423800 DNA binding protein, putative, expressed -
13 Sobic.002G393000 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
14 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
15 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
16 Sobic.003G352300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
17 Sobic.006G275200 CHCH domain containing protein, expressed -
18 Sobic.008G136400 expressed protein -
19 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.004G216600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@OsGrx_C2.1 - glutaredoxin subgroup I, expressed K03676: grxC, GLRX, glutaredoxin 3


Gene co-expression network
sample Sobic009G183400 Sobic009G183400 Sobic001G476500 Sobic001G476500 Sobic009G183400--Sobic001G476500 Sobic001G119400 Sobic001G119400 Sobic009G183400--Sobic001G119400 Sobic006G092500 Sobic006G092500 Sobic009G183400--Sobic006G092500 Sobic001G038900 Sobic001G038900 Sobic009G183400--Sobic001G038900 Sobic001G097600 Sobic001G097600 Sobic009G183400--Sobic001G097600 Sobic009G061200 Sobic009G061200 Sobic009G183400--Sobic009G061200 Sobic002G414600 Sobic002G414600 Sobic009G183400--Sobic002G414600 Sobic004G100700 Sobic004G100700 Sobic009G183400--Sobic004G100700 Sobic001G140900 Sobic001G140900 Sobic009G183400--Sobic001G140900 Sobic001G476500--Sobic006G092500 Sobic001G476500--Sobic009G183400 Sobic003G417800 Sobic003G417800 Sobic001G476500--Sobic003G417800 Sobic002G287100 Sobic002G287100 Sobic001G476500--Sobic002G287100 Sobic001G476500--Sobic004G100700 Sobic009G240600 Sobic009G240600 Sobic001G476500--Sobic009G240600 Sobic001G476500--Sobic001G119400 Sobic003G033900 Sobic003G033900 Sobic001G476500--Sobic003G033900 Sobic001G500000 Sobic001G500000 Sobic001G476500--Sobic001G500000 Sobic001G119400--Sobic009G183400 Sobic001G423800 Sobic001G423800 Sobic001G119400--Sobic001G423800 Sobic002G393000 Sobic002G393000 Sobic001G119400--Sobic002G393000 Sobic009G008900 Sobic009G008900 Sobic001G119400--Sobic009G008900 Sobic009G139400 Sobic009G139400 Sobic001G119400--Sobic009G139400 Sobic001G119400--Sobic001G038900 Sobic006G275200 Sobic006G275200 Sobic001G119400--Sobic006G275200 Sobic006G099900 Sobic006G099900 Sobic001G119400--Sobic006G099900 Sobic001G119400--Sobic003G417800 Sobic006G092500--Sobic001G476500 Sobic006G092500--Sobic009G183400 Sobic006G092500--Sobic004G100700 Sobic004G205100 Sobic004G205100 Sobic006G092500--Sobic004G205100 Sobic009G229000 Sobic009G229000 Sobic006G092500--Sobic009G229000 Sobic005G063100 Sobic005G063100 Sobic006G092500--Sobic005G063100 Sobic003G352300 Sobic003G352300 Sobic006G092500--Sobic003G352300 Sobic003G117600 Sobic003G117600 Sobic006G092500--Sobic003G117600 Sobic010G259600 Sobic010G259600 Sobic006G092500--Sobic010G259600 Sobic002G140400 Sobic002G140400 Sobic001G038900--Sobic002G140400 Sobic001G038900--Sobic001G140900 Sobic008G136400 Sobic008G136400 Sobic001G038900--Sobic008G136400 Sobic008G050600 Sobic008G050600 Sobic001G038900--Sobic008G050600 Sobic001G038900--Sobic001G423800 Sobic009G159400 Sobic009G159400 Sobic001G038900--Sobic009G159400 Sobic003G345100 Sobic003G345100 Sobic001G038900--Sobic003G345100 Sobic001G367600 Sobic001G367600 Sobic001G038900--Sobic001G367600 Sobic004G189400 Sobic004G189400 Sobic001G038900--Sobic004G189400 Sobic001G097600--Sobic009G183400 Sobic001G097600--Sobic006G275200 Sobic001G097600--Sobic002G414600 Sobic001G317000 Sobic001G317000 Sobic001G097600--Sobic001G317000 Sobic003G367200 Sobic003G367200 Sobic001G097600--Sobic003G367200 Sobic001G097600--Sobic001G038900 Sobic001G097600--Sobic001G119400 Sobic004G216600 Sobic004G216600 Sobic001G097600--Sobic004G216600 Sobic001G097600--Sobic008G136400 Sobic009G061200--Sobic004G216600 Sobic009G061200--Sobic009G183400 Sobic009G061200--Sobic001G476500 Sobic009G061200--Sobic001G119400 Sobic009G061200--Sobic001G423800 Sobic002G361100 Sobic002G361100 Sobic009G061200--Sobic002G361100 Sobic002G188900 Sobic002G188900 Sobic009G061200--Sobic002G188900 Sobic009G061200--Sobic009G008900 Sobic009G061200--Sobic004G100700 Sobic001G252300 Sobic001G252300 Sobic002G414600--Sobic001G252300 Sobic002G414600--Sobic009G183400 Sobic002G414600--Sobic001G097600 Sobic002G414600--Sobic002G393000 Sobic002G414600--Sobic001G119400 Sobic002G414600--Sobic009G008900 Sobic005G051200 Sobic005G051200 Sobic002G414600--Sobic005G051200 Sobic006G173900 Sobic006G173900 Sobic002G414600--Sobic006G173900 Sobic002G414600--Sobic006G275200 Sobic005G011300 Sobic005G011300 Sobic004G100700--Sobic005G011300 Sobic004G100700--Sobic002G188900 Sobic004G100700--Sobic001G140900 Sobic001G108200 Sobic001G108200 Sobic004G100700--Sobic001G108200 Sobic001G169500 Sobic001G169500 Sobic004G100700--Sobic001G169500 Sobic004G141200 Sobic004G141200 Sobic004G100700--Sobic004G141200 Sobic003G393900 Sobic003G393900 Sobic004G100700--Sobic003G393900 Sobic004G301000 Sobic004G301000 Sobic004G100700--Sobic004G301000 Sobic004G100700--Sobic001G367600 Sobic001G140900--Sobic008G050600 Sobic001G140900--Sobic003G345100 Sobic001G140900--Sobic001G038900 Sobic001G140900--Sobic005G063100 Sobic001G140900--Sobic004G100700 Sobic003G369100 Sobic003G369100 Sobic001G140900--Sobic003G369100 Sobic001G140900--Sobic001G367600 Sobic001G140900--Sobic008G136400 Sobic001G140900--Sobic004G141200
Octagon: transcription factors


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