Gene annotation
Transcriptome id Sobic.004G205100.1
Synonym GAPC2, Sb04g025120, GAPC-2
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
UniProt C5XX52
Pfam PF00044 PF02800
Panther DB PTHR10836 PTHR10836:SF59
NCBI CDD KOG0657; Glyceraldehyde 3-phosphate dehydrogenase
KEGG Orthology K00134; GAPDH, glyceraldehyde 3-phosphate dehydrogenase
Gene Ontology GO:0016620; oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor


Orthologs (automatic annotation)
TAIR AT1G13440 : glyceraldehyde-3-phosphate dehydrogenase C2
RAP-DB (Rice) LOC_Os04g40950.1 : glyceraldehyde-3-phosphate dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a031861 , Zm00025a021282 , Zm00025a011792
Brachypodium KQJ94916 , KQK23842 , KQJ94926 , KQK23841 , KQJ94918
Barley HORVU6Hr1G054520.10 , HORVU6Hr1G054520.11 , HORVU6Hr1G054520.12 , HORVU6Hr1G054520.13 , HORVU7Hr1G074690.3 , HORVU7Hr1G074690.2 , HORVU7Hr1G074690.1 , HORVU7Hr1G074690.7 , HORVU7Hr1G074690.6 , HORVU7Hr1G074690.5 , HORVU7Hr1G074690.4 , HORVU7Hr1G074690.9 , HORVU7Hr1G074690.8 , HORVU6Hr1G054520.8 , HORVU6Hr1G054520.9 , HORVU6Hr1G054520.6 , HORVU6Hr1G054520.7 , HORVU6Hr1G054520.4 , HORVU6Hr1G054520.5 , HORVU6Hr1G054520.2 , HORVU6Hr1G054520.3 , HORVU6Hr1G054520.1
Wheat TraesCS7B02G213300 , TraesCS6D02G196300 , TraesCS6D02G196300 , TraesCS7B02G234400 , TraesCS7D02G309500 , TraesCS6A02G213700 , TraesCS6B02G243700 , TraesCS6B02G243700 , TraesCS7A02G313100 , TraesCS7A02G313100 , TraesCS7A02G313100
Populus PNT58052 , PNT58053


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cDNA sequences
Sobic.004G205100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G352300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
2 Sobic.006G092500 expressed protein -
3 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
4 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
5 Sobic.001G476500 helix-loop-helix DNA-binding protein, putative, expressed -
6 Sobic.007G184600 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
7 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
8 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.003G417800 down-regulated TF in developmental senescence(PubMedID : 27586543)@histone-like transcription factor and archaeal histone, putative, expressed -
10 Sobic.005G063100 expressed protein -
11 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
12 Sobic.010G259600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed -
13 Sobic.001G140900 helix-loop-helix DNA-binding protein, putative, expressed -
14 Sobic.006G277600 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
16 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
17 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.001G435000 gibberellin receptor GID1L2, putative, expressed -
19 Sobic.006G067800 60S acidic ribosomal protein, putative, expressed K02943: RP-LP2, large subunit ribosomal protein LP2
20 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -


Gene co-expression network
sample Sobic004G205100 Sobic004G205100 Sobic003G352300 Sobic003G352300 Sobic004G205100--Sobic003G352300 Sobic006G092500 Sobic006G092500 Sobic004G205100--Sobic006G092500 Sobic009G183400 Sobic009G183400 Sobic004G205100--Sobic009G183400 Sobic009G159400 Sobic009G159400 Sobic004G205100--Sobic009G159400 Sobic001G476500 Sobic001G476500 Sobic004G205100--Sobic001G476500 Sobic007G184600 Sobic007G184600 Sobic004G205100--Sobic007G184600 Sobic005G091500 Sobic005G091500 Sobic004G205100--Sobic005G091500 Sobic006G099900 Sobic006G099900 Sobic004G205100--Sobic006G099900 Sobic003G417800 Sobic003G417800 Sobic004G205100--Sobic003G417800 Sobic003G352300--Sobic004G205100 Sobic010G259600 Sobic010G259600 Sobic003G352300--Sobic010G259600 Sobic002G125700 Sobic002G125700 Sobic003G352300--Sobic002G125700 Sobic003G352300--Sobic009G159400 Sobic001G503100 Sobic001G503100 Sobic003G352300--Sobic001G503100 Sobic003G352300--Sobic006G092500 Sobic003G352300--Sobic009G183400 Sobic003G352300--Sobic006G099900 Sobic003G352300--Sobic003G417800 Sobic006G092500--Sobic001G476500 Sobic006G092500--Sobic009G183400 Sobic004G100700 Sobic004G100700 Sobic006G092500--Sobic004G100700 Sobic006G092500--Sobic004G205100 Sobic009G229000 Sobic009G229000 Sobic006G092500--Sobic009G229000 Sobic005G063100 Sobic005G063100 Sobic006G092500--Sobic005G063100 Sobic006G092500--Sobic003G352300 Sobic003G117600 Sobic003G117600 Sobic006G092500--Sobic003G117600 Sobic006G092500--Sobic010G259600 Sobic009G183400--Sobic001G476500 Sobic001G119400 Sobic001G119400 Sobic009G183400--Sobic001G119400 Sobic009G183400--Sobic006G092500 Sobic001G038900 Sobic001G038900 Sobic009G183400--Sobic001G038900 Sobic001G097600 Sobic001G097600 Sobic009G183400--Sobic001G097600 Sobic009G061200 Sobic009G061200 Sobic009G183400--Sobic009G061200 Sobic002G414600 Sobic002G414600 Sobic009G183400--Sobic002G414600 Sobic009G183400--Sobic004G100700 Sobic001G140900 Sobic001G140900 Sobic009G183400--Sobic001G140900 Sobic009G159400--Sobic001G038900 Sobic001G435000 Sobic001G435000 Sobic009G159400--Sobic001G435000 Sobic004G321300 Sobic004G321300 Sobic009G159400--Sobic004G321300 Sobic003G345100 Sobic003G345100 Sobic009G159400--Sobic003G345100 Sobic004G208700 Sobic004G208700 Sobic009G159400--Sobic004G208700 Sobic009G159400--Sobic001G140900 Sobic008G050600 Sobic008G050600 Sobic009G159400--Sobic008G050600 Sobic009G159400--Sobic010G259600 Sobic004G237800 Sobic004G237800 Sobic009G159400--Sobic004G237800 Sobic001G476500--Sobic006G092500 Sobic001G476500--Sobic009G183400 Sobic001G476500--Sobic003G417800 Sobic002G287100 Sobic002G287100 Sobic001G476500--Sobic002G287100 Sobic001G476500--Sobic004G100700 Sobic009G240600 Sobic009G240600 Sobic001G476500--Sobic009G240600 Sobic001G476500--Sobic001G119400 Sobic003G033900 Sobic003G033900 Sobic001G476500--Sobic003G033900 Sobic001G500000 Sobic001G500000 Sobic001G476500--Sobic001G500000 Sobic002G200600 Sobic002G200600 Sobic007G184600--Sobic002G200600 Sobic001G374700 Sobic001G374700 Sobic007G184600--Sobic001G374700 Sobic001G402050 Sobic001G402050 Sobic007G184600--Sobic001G402050 Sobic002G081600 Sobic002G081600 Sobic007G184600--Sobic002G081600 Sobic001G493001 Sobic001G493001 Sobic007G184600--Sobic001G493001 Sobic001G177800 Sobic001G177800 Sobic007G184600--Sobic001G177800 Sobic006G067800 Sobic006G067800 Sobic007G184600--Sobic006G067800 Sobic003G322400 Sobic003G322400 Sobic007G184600--Sobic003G322400 Sobic003G346600 Sobic003G346600 Sobic007G184600--Sobic003G346600 Sobic004G189400 Sobic004G189400 Sobic005G091500--Sobic004G189400 Sobic005G091500--Sobic004G237800 Sobic005G091500--Sobic005G063100 Sobic005G091500--Sobic008G050600 Sobic002G055700 Sobic002G055700 Sobic005G091500--Sobic002G055700 Sobic005G091500--Sobic006G099900 Sobic003G382600 Sobic003G382600 Sobic005G091500--Sobic003G382600 Sobic005G091500--Sobic009G159400 Sobic003G286600 Sobic003G286600 Sobic005G091500--Sobic003G286600 Sobic007G227300 Sobic007G227300 Sobic006G099900--Sobic007G227300 Sobic003G252800 Sobic003G252800 Sobic006G099900--Sobic003G252800 Sobic001G317200 Sobic001G317200 Sobic006G099900--Sobic001G317200 Sobic006G099900--Sobic003G286600 Sobic010G084400 Sobic010G084400 Sobic006G099900--Sobic010G084400 Sobic006G099900--Sobic004G189400 Sobic006G099900--Sobic008G050600 Sobic006G099900--Sobic005G091500 Sobic006G277600 Sobic006G277600 Sobic006G099900--Sobic006G277600 Sobic003G417800--Sobic001G476500 Sobic003G437200 Sobic003G437200 Sobic003G417800--Sobic003G437200 Sobic003G417800--Sobic009G183400 Sobic003G062600 Sobic003G062600 Sobic003G417800--Sobic003G062600 Sobic003G417800--Sobic001G119400 Sobic004G107700 Sobic004G107700 Sobic003G417800--Sobic004G107700 Sobic003G417800--Sobic006G099900 Sobic003G417800--Sobic003G352300 Sobic003G417800--Sobic009G240600
Octagon: transcription factors


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