Gene annotation
Transcriptome id Sobic.001G476500.1
Synonym Sb01g044640
Functional annotation helix-loop-helix DNA-binding protein, putative, expressed
UniProt C5WUU8
Pfam PF00010
Panther DB PTHR11969 PTHR11969:SF24
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G72210 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g08930.1 : helix-loop-helix DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a001021 , Zm00025a004941 , Zm00025a021600 , Zm00025a056723 , Zm00025a053227 , Zm00025a032372
Brachypodium KQJ90584 , KQK23205 , PNT64756 , KQK05832 , KQJ84300
Barley HORVU5Hr1G070000.8 , HORVU5Hr1G070000.9 , HORVU5Hr1G070000.1 , HORVU5Hr1G070000.2 , HORVU5Hr1G070000.3 , HORVU5Hr1G070000.4 , HORVU5Hr1G070000.5 , HORVU5Hr1G070000.7 , HORVU4Hr1G078270.6 , HORVU4Hr1G078270.4 , HORVU4Hr1G078270.5 , HORVU4Hr1G078270.2 , HORVU4Hr1G078270.3 , HORVU4Hr1G078270.1 , HORVU2Hr1G106030.1 , HORVU2Hr1G106030.2
Wheat TraesCS4B02G304500 , TraesCS2D02G448000 , TraesCS4D02G302700 , TraesCS2B02G469700 , TraesCS2A02G448800 , TraesCS5A02G248200 , TraesCS5D02G255100 , TraesCS4A02G404700 , TraesCS2B02G469800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G092500 expressed protein -
2 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
3 Sobic.003G417800 down-regulated TF in developmental senescence(PubMedID : 27586543)@histone-like transcription factor and archaeal histone, putative, expressed -
4 Sobic.002G287100 flavin-containing monooxygenase family protein, putative, expressed -
5 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
6 Sobic.009G240600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase, putative, expressed -
7 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
8 Sobic.003G033900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K01762: 1-aminocyclopropane-1-carboxylate synthase
9 Sobic.001G500000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.003G352300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
11 Sobic.004G205100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
12 Sobic.009G061200 universal stress protein domain containing protein, putative, expressed -
13 Sobic.002G188900 cytokinin-O-glucosyltransferase 1, putative, expressed -
14 Sobic.001G481400 similar to AP2 domain containing protein(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@similar to AP2 domain containing protein(PubMedID : 24655390)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
15 Sobic.001G140900 helix-loop-helix DNA-binding protein, putative, expressed -
16 Sobic.001G231700 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
17 Sobic.006G277600 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
19 Sobic.008G186100 helix-loop-helix DNA-binding domain containing protein, expressed -
20 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G476500 Sobic001G476500 Sobic006G092500 Sobic006G092500 Sobic001G476500--Sobic006G092500 Sobic009G183400 Sobic009G183400 Sobic001G476500--Sobic009G183400 Sobic003G417800 Sobic003G417800 Sobic001G476500--Sobic003G417800 Sobic002G287100 Sobic002G287100 Sobic001G476500--Sobic002G287100 Sobic004G100700 Sobic004G100700 Sobic001G476500--Sobic004G100700 Sobic009G240600 Sobic009G240600 Sobic001G476500--Sobic009G240600 Sobic001G119400 Sobic001G119400 Sobic001G476500--Sobic001G119400 Sobic003G033900 Sobic003G033900 Sobic001G476500--Sobic003G033900 Sobic001G500000 Sobic001G500000 Sobic001G476500--Sobic001G500000 Sobic006G092500--Sobic001G476500 Sobic006G092500--Sobic009G183400 Sobic006G092500--Sobic004G100700 Sobic004G205100 Sobic004G205100 Sobic006G092500--Sobic004G205100 Sobic009G229000 Sobic009G229000 Sobic006G092500--Sobic009G229000 Sobic005G063100 Sobic005G063100 Sobic006G092500--Sobic005G063100 Sobic003G352300 Sobic003G352300 Sobic006G092500--Sobic003G352300 Sobic003G117600 Sobic003G117600 Sobic006G092500--Sobic003G117600 Sobic010G259600 Sobic010G259600 Sobic006G092500--Sobic010G259600 Sobic009G183400--Sobic001G476500 Sobic009G183400--Sobic001G119400 Sobic009G183400--Sobic006G092500 Sobic001G038900 Sobic001G038900 Sobic009G183400--Sobic001G038900 Sobic001G097600 Sobic001G097600 Sobic009G183400--Sobic001G097600 Sobic009G061200 Sobic009G061200 Sobic009G183400--Sobic009G061200 Sobic002G414600 Sobic002G414600 Sobic009G183400--Sobic002G414600 Sobic009G183400--Sobic004G100700 Sobic001G140900 Sobic001G140900 Sobic009G183400--Sobic001G140900 Sobic003G417800--Sobic001G476500 Sobic003G437200 Sobic003G437200 Sobic003G417800--Sobic003G437200 Sobic003G417800--Sobic009G183400 Sobic003G062600 Sobic003G062600 Sobic003G417800--Sobic003G062600 Sobic003G417800--Sobic001G119400 Sobic004G107700 Sobic004G107700 Sobic003G417800--Sobic004G107700 Sobic006G099900 Sobic006G099900 Sobic003G417800--Sobic006G099900 Sobic003G417800--Sobic003G352300 Sobic003G417800--Sobic009G240600 Sobic002G287100--Sobic001G500000 Sobic008G186100 Sobic008G186100 Sobic002G287100--Sobic008G186100 Sobic002G287100--Sobic001G476500 Sobic002G287100--Sobic009G240600 Sobic009G033300 Sobic009G033300 Sobic002G287100--Sobic009G033300 Sobic001G481400 Sobic001G481400 Sobic002G287100--Sobic001G481400 Sobic002G287100--Sobic009G183400 Sobic010G029700 Sobic010G029700 Sobic002G287100--Sobic010G029700 Sobic002G287100--Sobic006G092500 Sobic005G011300 Sobic005G011300 Sobic004G100700--Sobic005G011300 Sobic002G188900 Sobic002G188900 Sobic004G100700--Sobic002G188900 Sobic004G100700--Sobic001G140900 Sobic001G108200 Sobic001G108200 Sobic004G100700--Sobic001G108200 Sobic001G169500 Sobic001G169500 Sobic004G100700--Sobic001G169500 Sobic004G141200 Sobic004G141200 Sobic004G100700--Sobic004G141200 Sobic003G393900 Sobic003G393900 Sobic004G100700--Sobic003G393900 Sobic004G301000 Sobic004G301000 Sobic004G100700--Sobic004G301000 Sobic001G367600 Sobic001G367600 Sobic004G100700--Sobic001G367600 Sobic009G240600--Sobic001G481400 Sobic007G227300 Sobic007G227300 Sobic009G240600--Sobic007G227300 Sobic001G231700 Sobic001G231700 Sobic009G240600--Sobic001G231700 Sobic006G103000 Sobic006G103000 Sobic009G240600--Sobic006G103000 Sobic009G240600--Sobic001G500000 Sobic009G240600--Sobic002G287100 Sobic009G240600--Sobic001G476500 Sobic009G240600--Sobic003G417800 Sobic001G192200 Sobic001G192200 Sobic009G240600--Sobic001G192200 Sobic001G119400--Sobic009G183400 Sobic001G423800 Sobic001G423800 Sobic001G119400--Sobic001G423800 Sobic002G393000 Sobic002G393000 Sobic001G119400--Sobic002G393000 Sobic009G008900 Sobic009G008900 Sobic001G119400--Sobic009G008900 Sobic009G139400 Sobic009G139400 Sobic001G119400--Sobic009G139400 Sobic001G119400--Sobic001G038900 Sobic006G275200 Sobic006G275200 Sobic001G119400--Sobic006G275200 Sobic001G119400--Sobic006G099900 Sobic001G119400--Sobic003G417800 Sobic003G033900--Sobic002G188900 Sobic003G033900--Sobic001G108200 Sobic003G033900--Sobic004G100700 Sobic003G033900--Sobic003G393900 Sobic003G033900--Sobic001G476500 Sobic004G304625 Sobic004G304625 Sobic003G033900--Sobic004G304625 Sobic003G033900--Sobic005G011300 Sobic003G033900--Sobic004G141200 Sobic004G229800 Sobic004G229800 Sobic003G033900--Sobic004G229800 Sobic003G084400 Sobic003G084400 Sobic001G500000--Sobic003G084400 Sobic001G500000--Sobic002G287100 Sobic001G500000--Sobic001G481400 Sobic001G500000--Sobic009G240600 Sobic004G046200 Sobic004G046200 Sobic001G500000--Sobic004G046200 Sobic001G500000--Sobic001G367600 Sobic009G111000 Sobic009G111000 Sobic001G500000--Sobic009G111000 Sobic001G500000--Sobic001G231700 Sobic001G500000--Sobic006G103000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.