Gene annotation
Transcriptome id Sobic.003G033900.1
Synonym Sb03g003070, ACS7, ATACS7
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
aminotransferase, classes I and II, domain containing protein, expressed
UniProt C5XLY3
Pfam PF00155
Panther DB PTHR11751 PTHR11751:SF298
NCBI CDD -
KEGG Orthology K01762; 1-aminocyclopropane-1-carboxylate synthase
Gene Ontology GO:0009058; biosynthetic process


Orthologs (automatic annotation)
TAIR AT4G26200 : 1-amino-cyclopropane-1-carboxylate synthase 7
RAP-DB (Rice) LOC_Os01g09700.1 : aminotransferase, classes I and II, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023034 , Zm00025a007983
Brachypodium KQK13419 , KQK03137 , PNT74204
Barley HORVU3Hr1G019430.7 , HORVU3Hr1G019430.4 , HORVU3Hr1G019430.1 , HORVU3Hr1G019430.6 , HORVU3Hr1G019430.5 , HORVU3Hr1G019430.2 , HORVU3Hr1G019430.3 , HORVU3Hr1G019410.1 , HORVU3Hr1G019430.8
Wheat TraesCS3A02G106600 , TraesCS3B02G125200 , TraesCS3D02G108700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G188900 cytokinin-O-glucosyltransferase 1, putative, expressed -
2 Sobic.001G108200 expressed protein -
3 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
4 Sobic.003G393900 Fructose-bisphosphate aldolase(PubMedID : 26186930)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
5 Sobic.001G476500 helix-loop-helix DNA-binding protein, putative, expressed -
6 Sobic.004G304625 - K15095: (+)-neomenthol dehydrogenase
7 Sobic.005G011300 peroxidase precursor, putative, expressed K00430: peroxidase
8 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
9 Sobic.004G229800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 2, putative, expressed -
10 Sobic.007G036900 triacylglycerol lipase like protein, putative, expressed -
11 Sobic.007G155000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
12 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
13 Sobic.007G057000 expressed protein -
14 Sobic.001G423800 DNA binding protein, putative, expressed -
15 Sobic.001G435000 gibberellin receptor GID1L2, putative, expressed -
16 Sobic.001G140900 helix-loop-helix DNA-binding protein, putative, expressed -
17 Sobic.009G224100 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
18 Sobic.004G301000 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
19 Sobic.004G243100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
20 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic003G033900 Sobic003G033900 Sobic002G188900 Sobic002G188900 Sobic003G033900--Sobic002G188900 Sobic001G108200 Sobic001G108200 Sobic003G033900--Sobic001G108200 Sobic004G100700 Sobic004G100700 Sobic003G033900--Sobic004G100700 Sobic003G393900 Sobic003G393900 Sobic003G033900--Sobic003G393900 Sobic001G476500 Sobic001G476500 Sobic003G033900--Sobic001G476500 Sobic004G304625 Sobic004G304625 Sobic003G033900--Sobic004G304625 Sobic005G011300 Sobic005G011300 Sobic003G033900--Sobic005G011300 Sobic004G141200 Sobic004G141200 Sobic003G033900--Sobic004G141200 Sobic004G229800 Sobic004G229800 Sobic003G033900--Sobic004G229800 Sobic002G188900--Sobic004G100700 Sobic002G188900--Sobic005G011300 Sobic002G188900--Sobic003G033900 Sobic001G140900 Sobic001G140900 Sobic002G188900--Sobic001G140900 Sobic002G188900--Sobic004G141200 Sobic002G188900--Sobic003G393900 Sobic002G188900--Sobic001G108200 Sobic002G188900--Sobic004G304625 Sobic007G057000 Sobic007G057000 Sobic002G188900--Sobic007G057000 Sobic001G108200--Sobic004G141200 Sobic001G108200--Sobic003G393900 Sobic001G108200--Sobic004G100700 Sobic003G369100 Sobic003G369100 Sobic001G108200--Sobic003G369100 Sobic003G086600 Sobic003G086600 Sobic001G108200--Sobic003G086600 Sobic003G355100 Sobic003G355100 Sobic001G108200--Sobic003G355100 Sobic007G214600 Sobic007G214600 Sobic001G108200--Sobic007G214600 Sobic003G382800 Sobic003G382800 Sobic001G108200--Sobic003G382800 Sobic005G099000 Sobic005G099000 Sobic001G108200--Sobic005G099000 Sobic004G100700--Sobic005G011300 Sobic004G100700--Sobic002G188900 Sobic004G100700--Sobic001G140900 Sobic004G100700--Sobic001G108200 Sobic001G169500 Sobic001G169500 Sobic004G100700--Sobic001G169500 Sobic004G100700--Sobic004G141200 Sobic004G100700--Sobic003G393900 Sobic004G301000 Sobic004G301000 Sobic004G100700--Sobic004G301000 Sobic001G367600 Sobic001G367600 Sobic004G100700--Sobic001G367600 Sobic003G393900--Sobic004G141200 Sobic003G393900--Sobic001G108200 Sobic001G459800 Sobic001G459800 Sobic003G393900--Sobic001G459800 Sobic003G393900--Sobic004G100700 Sobic003G393900--Sobic002G188900 Sobic004G065500 Sobic004G065500 Sobic003G393900--Sobic004G065500 Sobic006G267200 Sobic006G267200 Sobic003G393900--Sobic006G267200 Sobic003G393900--Sobic005G011300 Sobic003G393900--Sobic003G369100 Sobic006G092500 Sobic006G092500 Sobic001G476500--Sobic006G092500 Sobic009G183400 Sobic009G183400 Sobic001G476500--Sobic009G183400 Sobic003G417800 Sobic003G417800 Sobic001G476500--Sobic003G417800 Sobic002G287100 Sobic002G287100 Sobic001G476500--Sobic002G287100 Sobic001G476500--Sobic004G100700 Sobic009G240600 Sobic009G240600 Sobic001G476500--Sobic009G240600 Sobic001G119400 Sobic001G119400 Sobic001G476500--Sobic001G119400 Sobic001G476500--Sobic003G033900 Sobic001G500000 Sobic001G500000 Sobic001G476500--Sobic001G500000 Sobic004G304625--Sobic004G141200 Sobic004G304625--Sobic001G108200 Sobic004G304625--Sobic002G188900 Sobic004G304625--Sobic003G369100 Sobic004G304625--Sobic001G140900 Sobic007G036900 Sobic007G036900 Sobic004G304625--Sobic007G036900 Sobic004G304625--Sobic003G393900 Sobic004G304625--Sobic003G033900 Sobic004G304625--Sobic007G057000 Sobic005G011300--Sobic004G100700 Sobic005G011300--Sobic001G169500 Sobic005G011300--Sobic002G188900 Sobic005G107900 Sobic005G107900 Sobic005G011300--Sobic005G107900 Sobic003G432700 Sobic003G432700 Sobic005G011300--Sobic003G432700 Sobic005G011300--Sobic004G141200 Sobic005G011300--Sobic001G140900 Sobic003G084400 Sobic003G084400 Sobic005G011300--Sobic003G084400 Sobic004G171400 Sobic004G171400 Sobic005G011300--Sobic004G171400 Sobic004G141200--Sobic003G369100 Sobic004G141200--Sobic001G108200 Sobic007G074000 Sobic007G074000 Sobic004G141200--Sobic007G074000 Sobic004G141200--Sobic003G393900 Sobic004G141200--Sobic001G459800 Sobic004G141200--Sobic004G304625 Sobic001G138600 Sobic001G138600 Sobic004G141200--Sobic001G138600 Sobic001G391500 Sobic001G391500 Sobic004G141200--Sobic001G391500 Sobic004G141200--Sobic004G100700 Sobic001G435000 Sobic001G435000 Sobic004G229800--Sobic001G435000 Sobic004G229800--Sobic007G036900 Sobic001G018300 Sobic001G018300 Sobic004G229800--Sobic001G018300 Sobic002G336600 Sobic002G336600 Sobic004G229800--Sobic002G336600 Sobic004G229800--Sobic004G141200 Sobic004G229800--Sobic002G188900 Sobic004G208700 Sobic004G208700 Sobic004G229800--Sobic004G208700 Sobic004G004500 Sobic004G004500 Sobic004G229800--Sobic004G004500 Sobic002G140400 Sobic002G140400 Sobic004G229800--Sobic002G140400
Octagon: transcription factors


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