Gene annotation
Transcriptome id Sobic.001G423800.1
Synonym Sb01g039840
Functional annotation DNA binding protein, putative, expressed
UniProt C5WQ24
Pfam PF03479
Panther DB PTHR31100 PTHR31100:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14465 : AT-hook motif nuclear-localized protein 20
RAP-DB (Rice) LOC_Os03g16350.1 : DNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a047312 , Zm00025a030516 , Zm00025a025945 , Zm00025a014098 , Zm00025a034453 , Zm00025a050111 , Zm00025a051503 , Zm00025a001794 , Zm00025a019952
Brachypodium -
Barley HORVU7Hr1G020390.1 , HORVU1Hr1G008650.1 , HORVU4Hr1G060280.1
Wheat TraesCS3A02G490800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G243100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
2 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
4 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
5 Sobic.001G018300 cytochrome P450 71E1, putative, expressed -
6 Sobic.007G155100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
7 Sobic.008G136400 expressed protein -
8 Sobic.002G393000 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
9 Sobic.004G189400 expressed protein -
10 Sobic.003G286600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
11 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
12 Sobic.002G188900 cytokinin-O-glucosyltransferase 1, putative, expressed -
13 Sobic.001G140900 helix-loop-helix DNA-binding protein, putative, expressed -
14 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
15 Sobic.002G251000 expressed protein -
16 Sobic.004G221500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein K13113: UBL5, ubiquitin-like protein 5
17 Sobic.002G192000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@AN1-like zinc finger domain containing protein, expressed -
18 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.002G263400 expressed protein -
20 Sobic.010G176600 - -


Gene co-expression network
sample Sobic001G423800 Sobic001G423800 Sobic004G243100 Sobic004G243100 Sobic001G423800--Sobic004G243100 Sobic002G140400 Sobic002G140400 Sobic001G423800--Sobic002G140400 Sobic001G038900 Sobic001G038900 Sobic001G423800--Sobic001G038900 Sobic001G119400 Sobic001G119400 Sobic001G423800--Sobic001G119400 Sobic001G018300 Sobic001G018300 Sobic001G423800--Sobic001G018300 Sobic007G155100 Sobic007G155100 Sobic001G423800--Sobic007G155100 Sobic008G136400 Sobic008G136400 Sobic001G423800--Sobic008G136400 Sobic002G393000 Sobic002G393000 Sobic001G423800--Sobic002G393000 Sobic004G189400 Sobic004G189400 Sobic001G423800--Sobic004G189400 Sobic004G243100--Sobic001G018300 Sobic001G231400 Sobic001G231400 Sobic004G243100--Sobic001G231400 Sobic009G224100 Sobic009G224100 Sobic004G243100--Sobic009G224100 Sobic004G243100--Sobic001G423800 Sobic002G139400 Sobic002G139400 Sobic004G243100--Sobic002G139400 Sobic002G192000 Sobic002G192000 Sobic004G243100--Sobic002G192000 Sobic002G251000 Sobic002G251000 Sobic004G243100--Sobic002G251000 Sobic003G282901 Sobic003G282901 Sobic004G243100--Sobic003G282901 Sobic002G263400 Sobic002G263400 Sobic004G243100--Sobic002G263400 Sobic002G140400--Sobic001G038900 Sobic002G140400--Sobic002G263400 Sobic002G140400--Sobic004G189400 Sobic002G140400--Sobic001G423800 Sobic002G140400--Sobic008G136400 Sobic007G074000 Sobic007G074000 Sobic002G140400--Sobic007G074000 Sobic004G237800 Sobic004G237800 Sobic002G140400--Sobic004G237800 Sobic008G050600 Sobic008G050600 Sobic002G140400--Sobic008G050600 Sobic003G286600 Sobic003G286600 Sobic002G140400--Sobic003G286600 Sobic001G038900--Sobic002G140400 Sobic001G140900 Sobic001G140900 Sobic001G038900--Sobic001G140900 Sobic001G038900--Sobic008G136400 Sobic001G038900--Sobic008G050600 Sobic001G038900--Sobic001G423800 Sobic009G159400 Sobic009G159400 Sobic001G038900--Sobic009G159400 Sobic003G345100 Sobic003G345100 Sobic001G038900--Sobic003G345100 Sobic001G367600 Sobic001G367600 Sobic001G038900--Sobic001G367600 Sobic001G038900--Sobic004G189400 Sobic009G183400 Sobic009G183400 Sobic001G119400--Sobic009G183400 Sobic001G119400--Sobic001G423800 Sobic001G119400--Sobic002G393000 Sobic009G008900 Sobic009G008900 Sobic001G119400--Sobic009G008900 Sobic009G139400 Sobic009G139400 Sobic001G119400--Sobic009G139400 Sobic001G119400--Sobic001G038900 Sobic006G275200 Sobic006G275200 Sobic001G119400--Sobic006G275200 Sobic006G099900 Sobic006G099900 Sobic001G119400--Sobic006G099900 Sobic003G417800 Sobic003G417800 Sobic001G119400--Sobic003G417800 Sobic001G018300--Sobic004G243100 Sobic001G018300--Sobic001G231400 Sobic001G018300--Sobic002G192000 Sobic001G318700 Sobic001G318700 Sobic001G018300--Sobic001G318700 Sobic001G018300--Sobic001G423800 Sobic001G018300--Sobic002G263400 Sobic004G229800 Sobic004G229800 Sobic001G018300--Sobic004G229800 Sobic001G018300--Sobic001G367600 Sobic001G018300--Sobic007G155100 Sobic007G155100--Sobic001G423800 Sobic001G402200 Sobic001G402200 Sobic007G155100--Sobic001G402200 Sobic007G155100--Sobic001G018300 Sobic001G365100 Sobic001G365100 Sobic007G155100--Sobic001G365100 Sobic007G155100--Sobic004G243100 Sobic006G084600 Sobic006G084600 Sobic007G155100--Sobic006G084600 Sobic010G066700 Sobic010G066700 Sobic007G155100--Sobic010G066700 Sobic004G221500 Sobic004G221500 Sobic007G155100--Sobic004G221500 Sobic002G184200 Sobic002G184200 Sobic007G155100--Sobic002G184200 Sobic008G136400--Sobic001G038900 Sobic008G136400--Sobic008G050600 Sobic008G136400--Sobic002G140400 Sobic008G136400--Sobic006G275200 Sobic008G136400--Sobic001G140900 Sobic006G158600 Sobic006G158600 Sobic008G136400--Sobic006G158600 Sobic008G136400--Sobic004G189400 Sobic008G136400--Sobic001G423800 Sobic008G136400--Sobic009G008900 Sobic002G393000--Sobic001G119400 Sobic002G393000--Sobic006G275200 Sobic006G173900 Sobic006G173900 Sobic002G393000--Sobic006G173900 Sobic002G393000--Sobic001G423800 Sobic002G393000--Sobic009G008900 Sobic002G393000--Sobic008G136400 Sobic010G099900 Sobic010G099900 Sobic002G393000--Sobic010G099900 Sobic002G414600 Sobic002G414600 Sobic002G393000--Sobic002G414600 Sobic002G393000--Sobic009G183400 Sobic004G189400--Sobic002G140400 Sobic005G091500 Sobic005G091500 Sobic004G189400--Sobic005G091500 Sobic004G189400--Sobic002G263400 Sobic004G189400--Sobic008G050600 Sobic004G189400--Sobic004G237800 Sobic003G382600 Sobic003G382600 Sobic004G189400--Sobic003G382600 Sobic004G189400--Sobic006G099900 Sobic004G189400--Sobic008G136400 Sobic005G029200 Sobic005G029200 Sobic004G189400--Sobic005G029200
Octagon: transcription factors


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