Gene annotation
Transcriptome id Sobic.001G140900.3,Sobic.001G140900.4
Synonym Sb01g012260
Functional annotation helix-loop-helix DNA-binding protein, putative, expressed
UniProt A0A1B6QIX2
Pfam PF00010
Panther DB PTHR23042 PTHR23042:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37850 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g46860.1 : helix-loop-helix DNA-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a007507 , Zm00025a007506
Brachypodium KQJ85669 , KQJ85668 , KQK13836
Barley HORVU0Hr1G014300.8 , HORVU0Hr1G014300.1 , HORVU0Hr1G014300.2 , HORVU0Hr1G014300.3 , HORVU0Hr1G014300.4 , HORVU0Hr1G014300.5 , HORVU0Hr1G014300.6 , HORVU0Hr1G014300.7
Wheat TraesCSU02G075100 , TraesCS4D02G018800 , TraesCS4D02G018800 , TraesCS3A02G019100 , TraesCS4B02G021500 , TraesCS4D02G019100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
2 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
3 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -
4 Sobic.005G063100 expressed protein -
5 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
6 Sobic.003G369100 AP2 domain containing protein, expressed -
7 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.008G136400 expressed protein -
9 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
10 Sobic.005G011300 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.002G188900 cytokinin-O-glucosyltransferase 1, putative, expressed -
12 Sobic.001G435000 gibberellin receptor GID1L2, putative, expressed -
13 Sobic.005G099000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed -
14 Sobic.001G318700 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
16 Sobic.001G423800 DNA binding protein, putative, expressed -
17 Sobic.001G112200 LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
18 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.004G237800 glycosyl transferase 8 domain containing protein, putative, expressed -
20 Sobic.002G055700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed K01183: chitinase


Gene co-expression network
sample Sobic001G140900 Sobic001G140900 Sobic008G050600 Sobic008G050600 Sobic001G140900--Sobic008G050600 Sobic003G345100 Sobic003G345100 Sobic001G140900--Sobic003G345100 Sobic001G038900 Sobic001G038900 Sobic001G140900--Sobic001G038900 Sobic005G063100 Sobic005G063100 Sobic001G140900--Sobic005G063100 Sobic004G100700 Sobic004G100700 Sobic001G140900--Sobic004G100700 Sobic003G369100 Sobic003G369100 Sobic001G140900--Sobic003G369100 Sobic001G367600 Sobic001G367600 Sobic001G140900--Sobic001G367600 Sobic008G136400 Sobic008G136400 Sobic001G140900--Sobic008G136400 Sobic004G141200 Sobic004G141200 Sobic001G140900--Sobic004G141200 Sobic008G050600--Sobic003G345100 Sobic008G050600--Sobic001G140900 Sobic008G050600--Sobic005G063100 Sobic003G286600 Sobic003G286600 Sobic008G050600--Sobic003G286600 Sobic009G164600 Sobic009G164600 Sobic008G050600--Sobic009G164600 Sobic008G050600--Sobic001G038900 Sobic008G050600--Sobic008G136400 Sobic004G189400 Sobic004G189400 Sobic008G050600--Sobic004G189400 Sobic005G051200 Sobic005G051200 Sobic008G050600--Sobic005G051200 Sobic003G345100--Sobic008G050600 Sobic003G345100--Sobic005G063100 Sobic003G345100--Sobic009G164600 Sobic003G345100--Sobic001G140900 Sobic004G208700 Sobic004G208700 Sobic003G345100--Sobic004G208700 Sobic005G099000 Sobic005G099000 Sobic003G345100--Sobic005G099000 Sobic009G159400 Sobic009G159400 Sobic003G345100--Sobic009G159400 Sobic003G345100--Sobic003G369100 Sobic001G435000 Sobic001G435000 Sobic003G345100--Sobic001G435000 Sobic002G140400 Sobic002G140400 Sobic001G038900--Sobic002G140400 Sobic001G038900--Sobic001G140900 Sobic001G038900--Sobic008G136400 Sobic001G038900--Sobic008G050600 Sobic001G423800 Sobic001G423800 Sobic001G038900--Sobic001G423800 Sobic001G038900--Sobic009G159400 Sobic001G038900--Sobic003G345100 Sobic001G038900--Sobic001G367600 Sobic001G038900--Sobic004G189400 Sobic005G063100--Sobic008G050600 Sobic005G063100--Sobic003G345100 Sobic005G063100--Sobic003G286600 Sobic005G063100--Sobic001G140900 Sobic005G063100--Sobic005G099000 Sobic009G234100 Sobic009G234100 Sobic005G063100--Sobic009G234100 Sobic005G091500 Sobic005G091500 Sobic005G063100--Sobic005G091500 Sobic005G063100--Sobic004G208700 Sobic005G063100--Sobic001G435000 Sobic005G011300 Sobic005G011300 Sobic004G100700--Sobic005G011300 Sobic002G188900 Sobic002G188900 Sobic004G100700--Sobic002G188900 Sobic004G100700--Sobic001G140900 Sobic001G108200 Sobic001G108200 Sobic004G100700--Sobic001G108200 Sobic001G169500 Sobic001G169500 Sobic004G100700--Sobic001G169500 Sobic004G100700--Sobic004G141200 Sobic003G393900 Sobic003G393900 Sobic004G100700--Sobic003G393900 Sobic004G301000 Sobic004G301000 Sobic004G100700--Sobic004G301000 Sobic004G100700--Sobic001G367600 Sobic003G369100--Sobic004G141200 Sobic007G074000 Sobic007G074000 Sobic003G369100--Sobic007G074000 Sobic001G138600 Sobic001G138600 Sobic003G369100--Sobic001G138600 Sobic003G369100--Sobic001G108200 Sobic003G369100--Sobic001G140900 Sobic001G112200 Sobic001G112200 Sobic003G369100--Sobic001G112200 Sobic003G369100--Sobic003G345100 Sobic003G369100--Sobic008G050600 Sobic001G308300 Sobic001G308300 Sobic003G369100--Sobic001G308300 Sobic002G192000 Sobic002G192000 Sobic001G367600--Sobic002G192000 Sobic001G367600--Sobic001G140900 Sobic001G367600--Sobic001G038900 Sobic001G231700 Sobic001G231700 Sobic001G367600--Sobic001G231700 Sobic002G017800 Sobic002G017800 Sobic001G367600--Sobic002G017800 Sobic001G367600--Sobic004G100700 Sobic006G103000 Sobic006G103000 Sobic001G367600--Sobic006G103000 Sobic002G055700 Sobic002G055700 Sobic001G367600--Sobic002G055700 Sobic002G353900 Sobic002G353900 Sobic001G367600--Sobic002G353900 Sobic008G136400--Sobic001G038900 Sobic008G136400--Sobic008G050600 Sobic008G136400--Sobic002G140400 Sobic006G275200 Sobic006G275200 Sobic008G136400--Sobic006G275200 Sobic008G136400--Sobic001G140900 Sobic006G158600 Sobic006G158600 Sobic008G136400--Sobic006G158600 Sobic008G136400--Sobic004G189400 Sobic008G136400--Sobic001G423800 Sobic009G008900 Sobic009G008900 Sobic008G136400--Sobic009G008900 Sobic004G141200--Sobic003G369100 Sobic004G141200--Sobic001G108200 Sobic004G141200--Sobic007G074000 Sobic004G141200--Sobic003G393900 Sobic001G459800 Sobic001G459800 Sobic004G141200--Sobic001G459800 Sobic004G304625 Sobic004G304625 Sobic004G141200--Sobic004G304625 Sobic004G141200--Sobic001G138600 Sobic001G391500 Sobic001G391500 Sobic004G141200--Sobic001G391500 Sobic004G141200--Sobic004G100700
Octagon: transcription factors


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