Gene annotation
Transcriptome id Sobic.003G086600.1
Synonym SbLBD16, lateral organ boundaries, Sb03g007270, LBD41
Functional annotation "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments" (PubMedID : 20499123)
DUF260 domain containing protein, putative, expressed
UniProt C5XQW1
Pfam PF03195
Panther DB PTHR31304 PTHR31304:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G02550 : LOB domain-containing protein 41
RAP-DB (Rice) LOC_Os01g03890.1 : DUF260 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a044237 , Zm00025a048595 , Zm00025a023631 , Zm00025a002858
Brachypodium KQJ88280 , KQJ88281
Barley HORVU2Hr1G035160.6 , HORVU2Hr1G035160.1 , HORVU2Hr1G066080.1 , HORVU2Hr1G066080.2 , HORVU4Hr1G086700.1 , HORVU3Hr1G016320.1 , HORVU2Hr1G035160.5 , HORVU2Hr1G035160.4 , HORVU2Hr1G035160.3 , HORVU2Hr1G035160.2
Wheat TraesCS2A02G194500 , TraesCS2D02G193400 , TraesCS2D02G193400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
2 Sobic.003G394400 ubiquitin family protein, putative, expressed -
3 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
4 Sobic.001G108200 expressed protein -
5 Sobic.004G166200 expressed protein -
6 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
7 Sobic.003G355100 expressed protein -
8 Sobic.001G397200 universal stress protein domain containing protein, putative, expressed -
9 Sobic.007G026600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
10 Sobic.001G149800 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
11 Sobic.003G367200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
12 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
13 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
14 Sobic.004G280200 tobamovirus multiplication protein, putative, expressed -
15 Sobic.007G214400 EF hand family protein, putative, expressed -
16 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
17 Sobic.003G377100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
18 Sobic.001G254100 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659838)@bHLH family protein, putative, expressed -
19 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.001G309600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type, domain containing protein, expressed -


Gene co-expression network
sample Sobic003G086600 Sobic003G086600 Sobic002G068600 Sobic002G068600 Sobic003G086600--Sobic002G068600 Sobic003G394400 Sobic003G394400 Sobic003G086600--Sobic003G394400 Sobic001G405500 Sobic001G405500 Sobic003G086600--Sobic001G405500 Sobic001G108200 Sobic001G108200 Sobic003G086600--Sobic001G108200 Sobic004G166200 Sobic004G166200 Sobic003G086600--Sobic004G166200 Sobic003G382800 Sobic003G382800 Sobic003G086600--Sobic003G382800 Sobic003G355100 Sobic003G355100 Sobic003G086600--Sobic003G355100 Sobic001G397200 Sobic001G397200 Sobic003G086600--Sobic001G397200 Sobic007G026600 Sobic007G026600 Sobic003G086600--Sobic007G026600 Sobic002G068600--Sobic003G394400 Sobic002G068600--Sobic003G086600 Sobic002G068600--Sobic004G166200 Sobic001G254100 Sobic001G254100 Sobic002G068600--Sobic001G254100 Sobic001G107800 Sobic001G107800 Sobic002G068600--Sobic001G107800 Sobic002G261200 Sobic002G261200 Sobic002G068600--Sobic002G261200 Sobic002G068600--Sobic007G026600 Sobic007G214400 Sobic007G214400 Sobic002G068600--Sobic007G214400 Sobic010G032100 Sobic010G032100 Sobic002G068600--Sobic010G032100 Sobic003G394400--Sobic002G068600 Sobic003G394400--Sobic007G214400 Sobic003G394400--Sobic003G086600 Sobic001G371800 Sobic001G371800 Sobic003G394400--Sobic001G371800 Sobic003G394400--Sobic004G166200 Sobic003G394400--Sobic001G107800 Sobic003G394400--Sobic003G355100 Sobic003G148600 Sobic003G148600 Sobic003G394400--Sobic003G148600 Sobic007G214600 Sobic007G214600 Sobic003G394400--Sobic007G214600 Sobic001G405500--Sobic003G086600 Sobic001G405500--Sobic003G148600 Sobic001G405500--Sobic003G394400 Sobic001G405500--Sobic001G108200 Sobic001G405500--Sobic007G026600 Sobic003G144700 Sobic003G144700 Sobic001G405500--Sobic003G144700 Sobic001G405500--Sobic003G355100 Sobic001G405500--Sobic003G382800 Sobic006G267200 Sobic006G267200 Sobic001G405500--Sobic006G267200 Sobic004G141200 Sobic004G141200 Sobic001G108200--Sobic004G141200 Sobic003G393900 Sobic003G393900 Sobic001G108200--Sobic003G393900 Sobic004G100700 Sobic004G100700 Sobic001G108200--Sobic004G100700 Sobic003G369100 Sobic003G369100 Sobic001G108200--Sobic003G369100 Sobic001G108200--Sobic003G086600 Sobic001G108200--Sobic003G355100 Sobic001G108200--Sobic007G214600 Sobic001G108200--Sobic003G382800 Sobic005G099000 Sobic005G099000 Sobic001G108200--Sobic005G099000 Sobic004G166200--Sobic003G394400 Sobic004G166200--Sobic002G068600 Sobic004G166200--Sobic003G148600 Sobic004G166200--Sobic001G371800 Sobic004G166200--Sobic007G214600 Sobic004G166200--Sobic001G107800 Sobic004G166200--Sobic003G355100 Sobic004G166200--Sobic003G382800 Sobic003G197200 Sobic003G197200 Sobic004G166200--Sobic003G197200 Sobic001G138600 Sobic001G138600 Sobic003G382800--Sobic001G138600 Sobic003G382800--Sobic004G141200 Sobic001G169500 Sobic001G169500 Sobic003G382800--Sobic001G169500 Sobic003G382800--Sobic001G108200 Sobic003G382800--Sobic003G394400 Sobic003G382800--Sobic004G166200 Sobic003G382800--Sobic002G068600 Sobic003G382800--Sobic003G086600 Sobic003G382800--Sobic003G148600 Sobic003G355100--Sobic007G214600 Sobic003G355100--Sobic003G197200 Sobic001G481300 Sobic001G481300 Sobic003G355100--Sobic001G481300 Sobic003G355100--Sobic003G148600 Sobic004G109600 Sobic004G109600 Sobic003G355100--Sobic004G109600 Sobic003G355100--Sobic003G394400 Sobic003G355100--Sobic001G108200 Sobic003G355100--Sobic003G144700 Sobic003G355100--Sobic004G166200 Sobic001G397200--Sobic010G032100 Sobic001G309600 Sobic001G309600 Sobic001G397200--Sobic001G309600 Sobic006G032700 Sobic006G032700 Sobic001G397200--Sobic006G032700 Sobic001G481500 Sobic001G481500 Sobic001G397200--Sobic001G481500 Sobic001G397200--Sobic003G086600 Sobic008G070350 Sobic008G070350 Sobic001G397200--Sobic008G070350 Sobic001G397200--Sobic002G068600 Sobic003G367200 Sobic003G367200 Sobic001G397200--Sobic003G367200 Sobic001G397200--Sobic007G026600 Sobic007G026600--Sobic002G068600 Sobic007G026600--Sobic001G405500 Sobic007G026600--Sobic003G148600 Sobic007G026600--Sobic001G107800 Sobic007G026600--Sobic003G086600 Sobic004G280200 Sobic004G280200 Sobic007G026600--Sobic004G280200 Sobic003G123600 Sobic003G123600 Sobic007G026600--Sobic003G123600 Sobic007G026600--Sobic003G394400 Sobic007G026600--Sobic003G144700
Octagon: transcription factors


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