Gene annotation
Transcriptome id Sobic.003G377100.1
Synonym Sb03g041700
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
acyl-desaturase, chloroplast precursor, putative, expressed
UniProt C5XRE8
Pfam PF03405
Panther DB PTHR31155 PTHR31155:SF3
NCBI CDD -
KEGG Orthology K03921; FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
Gene Ontology GO:0006631; fatty acid metabolic process


Orthologs (automatic annotation)
TAIR AT1G43800 : Plant stearoyl-acyl-carrier-protein desaturase family protein
RAP-DB (Rice) LOC_Os01g65830.1 : acyl-desaturase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a039503 , Zm00025a031382
Brachypodium KQK10887
Barley HORVU3Hr1G091320.3 , HORVU2Hr1G012600.1 , HORVU2Hr1G012600.2 , HORVU2Hr1G012780.1 , HORVU2Hr1G006990.1 , HORVU3Hr1G091320.2 , HORVU3Hr1G091320.1
Wheat TraesCS2D02G074000 , TraesCS3A02G408700 , TraesCS3D02G403800 , TraesCS2A02G075300
Populus -


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cDNA sequences
Sobic.003G377100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
2 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
3 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
4 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
5 Sobic.008G118700 respiratory burst oxidase, putative, expressed -
6 Sobic.004G166200 expressed protein -
7 Sobic.003G355100 expressed protein -
8 Sobic.001G108200 expressed protein -
9 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
10 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.007G214600 EF hand family protein, putative, expressed -
12 Sobic.003G394400 ubiquitin family protein, putative, expressed -
13 Sobic.003G393900 Fructose-bisphosphate aldolase(PubMedID : 26186930)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
14 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.001G459800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
16 Sobic.007G026600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
17 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
18 Sobic.005G011300 peroxidase precursor, putative, expressed K00430: peroxidase
19 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
20 Sobic.001G169500 - -


Gene co-expression network
sample Sobic003G377100 Sobic003G377100 Sobic003G148600 Sobic003G148600 Sobic003G377100--Sobic003G148600 Sobic002G068600 Sobic002G068600 Sobic003G377100--Sobic002G068600 Sobic003G086600 Sobic003G086600 Sobic003G377100--Sobic003G086600 Sobic001G405500 Sobic001G405500 Sobic003G377100--Sobic001G405500 Sobic008G118700 Sobic008G118700 Sobic003G377100--Sobic008G118700 Sobic004G166200 Sobic004G166200 Sobic003G377100--Sobic004G166200 Sobic003G355100 Sobic003G355100 Sobic003G377100--Sobic003G355100 Sobic001G108200 Sobic001G108200 Sobic003G377100--Sobic001G108200 Sobic003G197200 Sobic003G197200 Sobic003G377100--Sobic003G197200 Sobic003G148600--Sobic003G197200 Sobic003G123600 Sobic003G123600 Sobic003G148600--Sobic003G123600 Sobic003G144700 Sobic003G144700 Sobic003G148600--Sobic003G144700 Sobic003G148600--Sobic003G355100 Sobic007G214600 Sobic007G214600 Sobic003G148600--Sobic007G214600 Sobic003G148600--Sobic004G166200 Sobic001G107800 Sobic001G107800 Sobic003G148600--Sobic001G107800 Sobic003G148600--Sobic001G405500 Sobic003G394400 Sobic003G394400 Sobic003G148600--Sobic003G394400 Sobic002G068600--Sobic003G394400 Sobic002G068600--Sobic003G086600 Sobic002G068600--Sobic004G166200 Sobic001G254100 Sobic001G254100 Sobic002G068600--Sobic001G254100 Sobic002G068600--Sobic001G107800 Sobic002G261200 Sobic002G261200 Sobic002G068600--Sobic002G261200 Sobic007G026600 Sobic007G026600 Sobic002G068600--Sobic007G026600 Sobic007G214400 Sobic007G214400 Sobic002G068600--Sobic007G214400 Sobic010G032100 Sobic010G032100 Sobic002G068600--Sobic010G032100 Sobic003G086600--Sobic002G068600 Sobic003G086600--Sobic003G394400 Sobic003G086600--Sobic001G405500 Sobic003G086600--Sobic001G108200 Sobic003G086600--Sobic004G166200 Sobic003G382800 Sobic003G382800 Sobic003G086600--Sobic003G382800 Sobic003G086600--Sobic003G355100 Sobic001G397200 Sobic001G397200 Sobic003G086600--Sobic001G397200 Sobic003G086600--Sobic007G026600 Sobic001G405500--Sobic003G086600 Sobic001G405500--Sobic003G148600 Sobic001G405500--Sobic003G394400 Sobic001G405500--Sobic001G108200 Sobic001G405500--Sobic007G026600 Sobic001G405500--Sobic003G144700 Sobic001G405500--Sobic003G355100 Sobic001G405500--Sobic003G382800 Sobic006G267200 Sobic006G267200 Sobic001G405500--Sobic006G267200 Sobic008G118700--Sobic003G377100 Sobic008G118700--Sobic002G068600 Sobic008G118700--Sobic001G107800 Sobic001G201200 Sobic001G201200 Sobic008G118700--Sobic001G201200 Sobic008G118700--Sobic001G254100 Sobic001G149800 Sobic001G149800 Sobic008G118700--Sobic001G149800 Sobic001G371800 Sobic001G371800 Sobic008G118700--Sobic001G371800 Sobic008G118700--Sobic003G148600 Sobic003G353300 Sobic003G353300 Sobic008G118700--Sobic003G353300 Sobic004G166200--Sobic003G394400 Sobic004G166200--Sobic002G068600 Sobic004G166200--Sobic003G148600 Sobic004G166200--Sobic001G371800 Sobic004G166200--Sobic007G214600 Sobic004G166200--Sobic001G107800 Sobic004G166200--Sobic003G355100 Sobic004G166200--Sobic003G382800 Sobic004G166200--Sobic003G197200 Sobic003G355100--Sobic007G214600 Sobic003G355100--Sobic003G197200 Sobic001G481300 Sobic001G481300 Sobic003G355100--Sobic001G481300 Sobic003G355100--Sobic003G148600 Sobic004G109600 Sobic004G109600 Sobic003G355100--Sobic004G109600 Sobic003G355100--Sobic003G394400 Sobic003G355100--Sobic001G108200 Sobic003G355100--Sobic003G144700 Sobic003G355100--Sobic004G166200 Sobic004G141200 Sobic004G141200 Sobic001G108200--Sobic004G141200 Sobic003G393900 Sobic003G393900 Sobic001G108200--Sobic003G393900 Sobic004G100700 Sobic004G100700 Sobic001G108200--Sobic004G100700 Sobic003G369100 Sobic003G369100 Sobic001G108200--Sobic003G369100 Sobic001G108200--Sobic003G086600 Sobic001G108200--Sobic003G355100 Sobic001G108200--Sobic007G214600 Sobic001G108200--Sobic003G382800 Sobic005G099000 Sobic005G099000 Sobic001G108200--Sobic005G099000 Sobic003G197200--Sobic003G148600 Sobic003G197200--Sobic007G214600 Sobic003G197200--Sobic003G355100 Sobic003G197200--Sobic003G144700 Sobic001G443800 Sobic001G443800 Sobic003G197200--Sobic001G443800 Sobic003G197200--Sobic001G481300 Sobic003G197200--Sobic001G201200 Sobic003G197200--Sobic004G109600 Sobic003G197200--Sobic003G123600
Octagon: transcription factors


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