Gene annotation
| Transcriptome id | Sobic.008G118700.1 |
|---|---|
| Synonym | RBOHB, ATRBOHB, ATRBOHB-BETA, Sb08g017240 |
| Functional annotation | respiratory burst oxidase, putative, expressed |
| UniProt | A0A109NDI5 , C5YPE6 |
| Pfam | PF13405 PF01794 PF08022 PF08414 PF08030 |
| Panther DB | PTHR11972 PTHR11972:SF61 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0005509; calcium ion binding GO:0016491oxidoreductase activity GO:0004601peroxidase activity |
Orthologs (automatic annotation)
| TAIR | AT1G09090 : respiratory burst oxidase homolog B |
|---|---|
| RAP-DB (Rice) | LOC_Os12g35610.1 : respiratory burst oxidase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a015716 , Zm00025a015715 , Zm00025a015713 , Zm00025a033567 , Zm00025a054347 , Zm00025a026963 |
| Brachypodium | KQJ88319 , KQJ86446 |
| Barley | HORVU5Hr1G024550.13 , HORVU5Hr1G024550.12 , HORVU5Hr1G024550.11 , HORVU5Hr1G024550.10 , HORVU4Hr1G081670.3 , HORVU5Hr1G024550.9 , HORVU5Hr1G024550.8 , HORVU5Hr1G024550.7 , HORVU5Hr1G024550.6 , HORVU5Hr1G024550.4 , HORVU5Hr1G024550.3 , HORVU5Hr1G024550.2 , HORVU4Hr1G081670.2 , HORVU4Hr1G081670.1 , HORVU4Hr1G081670.4 , HORVU1Hr1G091930.1 , HORVU1Hr1G091930.3 , HORVU1Hr1G091930.2 , HORVU1Hr1G091930.5 , HORVU1Hr1G091930.7 , HORVU1Hr1G091930.6 |
| Wheat | TraesCS5B02G099700 , TraesCS5A02G499900 , TraesCS4D02G324800 , TraesCS4D02G324800 , TraesCS5D02G105900 , TraesCS1D02G284800 , TraesCS5A02G093600 , TraesCS5A02G093600 , TraesCS1D02G284800 , TraesCS4B02G327800 , TraesCS4B02G327800 , TraesCS1A02G285700 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G377100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed | K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase |
| 2 | Sobic.002G068600 | oxidoreductase, putative, expressed | K00472: prolyl 4-hydroxylase |
| 3 | Sobic.001G107800 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 4 | Sobic.001G201200 | - | - |
| 5 | Sobic.001G254100 | "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659838)@bHLH family protein, putative, expressed | - |
| 6 | Sobic.001G149800 | 2-aminoethanethiol dioxygenase, putative, expressed | K10712: cysteamine dioxygenase |
| 7 | Sobic.001G371800 | expressed protein | - |
| 8 | Sobic.003G148600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | - |
| 9 | Sobic.003G353300 | expressed protein | - |
| 10 | Sobic.001G076100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 11 | Sobic.003G394400 | ubiquitin family protein, putative, expressed | - |
| 12 | Sobic.004G166200 | expressed protein | - |
| 13 | Sobic.003G086600 | "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed | - |
| 14 | Sobic.007G026600 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed | - |
| 15 | Sobic.007G214400 | EF hand family protein, putative, expressed | - |
| 16 | Sobic.010G198500 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 17 | Sobic.003G197200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed | K05933: aminocyclopropanecarboxylate oxidase |
| 18 | Sobic.002G389000 | cytochrome P450 72A1, putative, expressed | - |
| 19 | Sobic.007G147700 | "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed | - |
| 20 | Sobic.003G355100 | expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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