Gene annotation
Transcriptome id Sobic.001G201200.1
Synonym
Functional annotation -
UniProt A0A1B6QJX3
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G443800 glutamate decarboxylase, putative, expressed K01580: E4.1.1.15, gadB, gadA, glutamate decarboxylase
2 Sobic.001G371800 expressed protein -
3 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
4 Sobic.010G198500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G076100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.007G214600 EF hand family protein, putative, expressed -
7 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
9 Sobic.007G147700 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR33 - Auxin-responsive SAUR gene family member, expressed -
10 Sobic.002G389000 cytochrome P450 72A1, putative, expressed -
11 Sobic.004G166200 expressed protein -
12 Sobic.004G109600 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.003G355100 expressed protein -
14 Sobic.001G481300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
15 Sobic.007G214400 EF hand family protein, putative, expressed -
16 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.008G118700 respiratory burst oxidase, putative, expressed -
18 Sobic.002G284000 pyridoxal-dependent decarboxylase protein, putative, expressed K01581: E4.1.1.17, ODC1, speC, ornithine decarboxylase
19 Sobic.003G394400 ubiquitin family protein, putative, expressed -
20 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase


Gene co-expression network
sample Sobic001G201200 Sobic001G201200 Sobic001G443800 Sobic001G443800 Sobic001G201200--Sobic001G443800 Sobic001G371800 Sobic001G371800 Sobic001G201200--Sobic001G371800 Sobic003G197200 Sobic003G197200 Sobic001G201200--Sobic003G197200 Sobic010G198500 Sobic010G198500 Sobic001G201200--Sobic010G198500 Sobic001G076100 Sobic001G076100 Sobic001G201200--Sobic001G076100 Sobic007G214600 Sobic007G214600 Sobic001G201200--Sobic007G214600 Sobic001G107800 Sobic001G107800 Sobic001G201200--Sobic001G107800 Sobic003G148600 Sobic003G148600 Sobic001G201200--Sobic003G148600 Sobic007G147700 Sobic007G147700 Sobic001G201200--Sobic007G147700 Sobic001G443800--Sobic003G197200 Sobic001G443800--Sobic001G201200 Sobic001G443800--Sobic001G076100 Sobic001G443800--Sobic003G148600 Sobic001G443800--Sobic001G371800 Sobic001G443800--Sobic010G198500 Sobic003G123600 Sobic003G123600 Sobic001G443800--Sobic003G123600 Sobic001G443800--Sobic007G214600 Sobic006G190100 Sobic006G190100 Sobic001G443800--Sobic006G190100 Sobic007G214400 Sobic007G214400 Sobic001G371800--Sobic007G214400 Sobic003G394400 Sobic003G394400 Sobic001G371800--Sobic003G394400 Sobic001G371800--Sobic001G201200 Sobic002G389000 Sobic002G389000 Sobic001G371800--Sobic002G389000 Sobic004G166200 Sobic004G166200 Sobic001G371800--Sobic004G166200 Sobic001G371800--Sobic001G107800 Sobic001G371800--Sobic007G214600 Sobic001G371800--Sobic003G197200 Sobic001G371800--Sobic003G148600 Sobic003G197200--Sobic003G148600 Sobic003G197200--Sobic007G214600 Sobic003G355100 Sobic003G355100 Sobic003G197200--Sobic003G355100 Sobic003G144700 Sobic003G144700 Sobic003G197200--Sobic003G144700 Sobic003G197200--Sobic001G443800 Sobic001G481300 Sobic001G481300 Sobic003G197200--Sobic001G481300 Sobic003G197200--Sobic001G201200 Sobic004G109600 Sobic004G109600 Sobic003G197200--Sobic004G109600 Sobic003G197200--Sobic003G123600 Sobic010G198500--Sobic007G214600 Sobic010G198500--Sobic001G201200 Sobic010G198500--Sobic003G197200 Sobic010G198500--Sobic007G147700 Sobic010G198500--Sobic001G443800 Sobic010G198500--Sobic004G109600 Sobic010G198500--Sobic001G371800 Sobic010G198500--Sobic003G355100 Sobic010G198500--Sobic001G481300 Sobic001G076100--Sobic001G201200 Sobic001G076100--Sobic001G443800 Sobic001G076100--Sobic003G123600 Sobic001G076100--Sobic001G371800 Sobic001G076100--Sobic001G107800 Sobic001G076100--Sobic002G389000 Sobic001G076100--Sobic003G148600 Sobic001G076100--Sobic003G197200 Sobic006G230600 Sobic006G230600 Sobic001G076100--Sobic006G230600 Sobic007G214600--Sobic003G355100 Sobic007G214600--Sobic003G197200 Sobic007G214600--Sobic004G109600 Sobic007G214600--Sobic003G148600 Sobic007G214600--Sobic001G481300 Sobic007G214600--Sobic010G198500 Sobic007G214600--Sobic001G371800 Sobic007G214600--Sobic003G394400 Sobic007G214600--Sobic004G166200 Sobic001G107800--Sobic003G123600 Sobic001G107800--Sobic003G394400 Sobic001G107800--Sobic007G214400 Sobic001G107800--Sobic003G148600 Sobic002G261200 Sobic002G261200 Sobic001G107800--Sobic002G261200 Sobic001G107800--Sobic001G371800 Sobic001G254100 Sobic001G254100 Sobic001G107800--Sobic001G254100 Sobic001G107800--Sobic003G197200 Sobic002G068600 Sobic002G068600 Sobic001G107800--Sobic002G068600 Sobic003G148600--Sobic003G197200 Sobic003G148600--Sobic003G123600 Sobic003G148600--Sobic003G144700 Sobic003G148600--Sobic003G355100 Sobic003G148600--Sobic007G214600 Sobic003G148600--Sobic004G166200 Sobic003G148600--Sobic001G107800 Sobic001G405500 Sobic001G405500 Sobic003G148600--Sobic001G405500 Sobic003G148600--Sobic003G394400 Sobic007G147700--Sobic010G198500 Sobic007G147700--Sobic003G197200 Sobic007G147700--Sobic001G201200 Sobic007G147700--Sobic001G443800 Sobic007G147700--Sobic007G214600 Sobic001G105900 Sobic001G105900 Sobic007G147700--Sobic001G105900 Sobic007G147700--Sobic001G481300 Sobic007G147700--Sobic003G355100 Sobic001G279350 Sobic001G279350 Sobic007G147700--Sobic001G279350
Octagon: transcription factors


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