Gene annotation
Transcriptome id Sobic.002G068600.1,Sobic.002G068600.2
Synonym Sb02g005750
Functional annotation oxidoreductase, putative, expressed
UniProt A0A1W0W2S1 , C5XCJ7
Pfam PF01549 PF03171
Panther DB PTHR10869 PTHR10869:SF62
NCBI CDD KOG1591; Prolyl 4-hydroxylase alpha subunit
KEGG Orthology K00472; prolyl 4-hydroxylase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT3G28480 : Oxoglutarate/iron-dependent oxygenase
RAP-DB (Rice) LOC_Os07g09630.1 : oxidoreductase, putative, expressed
MaizeGDB (Corn) Zm00025a016024 , Zm00025a006954
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G394400 ubiquitin family protein, putative, expressed -
2 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
3 Sobic.004G166200 expressed protein -
4 Sobic.001G254100 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659838)@bHLH family protein, putative, expressed -
5 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.002G261200 expressed protein -
7 Sobic.007G026600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
8 Sobic.007G214400 EF hand family protein, putative, expressed -
9 Sobic.010G032100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
10 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
11 Sobic.001G371800 expressed protein -
12 Sobic.001G149800 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
13 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
14 Sobic.001G169500 - -
15 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
16 Sobic.003G377100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
17 Sobic.007G214600 EF hand family protein, putative, expressed -
18 Sobic.001G108200 expressed protein -
19 Sobic.001G397200 universal stress protein domain containing protein, putative, expressed -
20 Sobic.003G355100 expressed protein -


Gene co-expression network
sample Sobic002G068600 Sobic002G068600 Sobic003G394400 Sobic003G394400 Sobic002G068600--Sobic003G394400 Sobic003G086600 Sobic003G086600 Sobic002G068600--Sobic003G086600 Sobic004G166200 Sobic004G166200 Sobic002G068600--Sobic004G166200 Sobic001G254100 Sobic001G254100 Sobic002G068600--Sobic001G254100 Sobic001G107800 Sobic001G107800 Sobic002G068600--Sobic001G107800 Sobic002G261200 Sobic002G261200 Sobic002G068600--Sobic002G261200 Sobic007G026600 Sobic007G026600 Sobic002G068600--Sobic007G026600 Sobic007G214400 Sobic007G214400 Sobic002G068600--Sobic007G214400 Sobic010G032100 Sobic010G032100 Sobic002G068600--Sobic010G032100 Sobic003G394400--Sobic002G068600 Sobic003G394400--Sobic007G214400 Sobic003G394400--Sobic003G086600 Sobic001G371800 Sobic001G371800 Sobic003G394400--Sobic001G371800 Sobic003G394400--Sobic004G166200 Sobic003G394400--Sobic001G107800 Sobic003G355100 Sobic003G355100 Sobic003G394400--Sobic003G355100 Sobic003G148600 Sobic003G148600 Sobic003G394400--Sobic003G148600 Sobic007G214600 Sobic007G214600 Sobic003G394400--Sobic007G214600 Sobic003G086600--Sobic002G068600 Sobic003G086600--Sobic003G394400 Sobic001G405500 Sobic001G405500 Sobic003G086600--Sobic001G405500 Sobic001G108200 Sobic001G108200 Sobic003G086600--Sobic001G108200 Sobic003G086600--Sobic004G166200 Sobic003G382800 Sobic003G382800 Sobic003G086600--Sobic003G382800 Sobic003G086600--Sobic003G355100 Sobic001G397200 Sobic001G397200 Sobic003G086600--Sobic001G397200 Sobic003G086600--Sobic007G026600 Sobic004G166200--Sobic003G394400 Sobic004G166200--Sobic002G068600 Sobic004G166200--Sobic003G148600 Sobic004G166200--Sobic001G371800 Sobic004G166200--Sobic007G214600 Sobic004G166200--Sobic001G107800 Sobic004G166200--Sobic003G355100 Sobic004G166200--Sobic003G382800 Sobic003G197200 Sobic003G197200 Sobic004G166200--Sobic003G197200 Sobic001G254100--Sobic002G068600 Sobic001G254100--Sobic001G107800 Sobic001G254100--Sobic003G394400 Sobic001G254100--Sobic002G261200 Sobic001G254100--Sobic004G166200 Sobic001G149800 Sobic001G149800 Sobic001G254100--Sobic001G149800 Sobic001G254100--Sobic007G214400 Sobic002G389000 Sobic002G389000 Sobic001G254100--Sobic002G389000 Sobic001G254100--Sobic003G086600 Sobic003G123600 Sobic003G123600 Sobic001G107800--Sobic003G123600 Sobic001G107800--Sobic003G394400 Sobic001G107800--Sobic007G214400 Sobic001G107800--Sobic003G148600 Sobic001G107800--Sobic002G261200 Sobic001G107800--Sobic001G371800 Sobic001G107800--Sobic001G254100 Sobic001G107800--Sobic003G197200 Sobic001G107800--Sobic002G068600 Sobic002G261200--Sobic001G107800 Sobic002G261200--Sobic002G068600 Sobic002G261200--Sobic001G254100 Sobic002G261200--Sobic010G032100 Sobic002G261200--Sobic003G394400 Sobic002G261200--Sobic004G166200 Sobic002G261200--Sobic002G389000 Sobic002G261200--Sobic007G214400 Sobic002G261200--Sobic001G149800 Sobic007G026600--Sobic002G068600 Sobic007G026600--Sobic001G405500 Sobic007G026600--Sobic003G148600 Sobic007G026600--Sobic001G107800 Sobic007G026600--Sobic003G086600 Sobic004G280200 Sobic004G280200 Sobic007G026600--Sobic004G280200 Sobic007G026600--Sobic003G123600 Sobic007G026600--Sobic003G394400 Sobic003G144700 Sobic003G144700 Sobic007G026600--Sobic003G144700 Sobic007G214400--Sobic003G394400 Sobic007G214400--Sobic001G371800 Sobic007G214400--Sobic002G389000 Sobic007G214400--Sobic001G107800 Sobic007G214400--Sobic002G068600 Sobic007G214400--Sobic001G254100 Sobic007G214400--Sobic002G261200 Sobic007G214400--Sobic003G086600 Sobic007G214400--Sobic007G214600 Sobic010G032100--Sobic001G397200 Sobic010G032100--Sobic002G068600 Sobic010G031100 Sobic010G031100 Sobic010G032100--Sobic010G031100 Sobic010G032100--Sobic002G261200 Sobic010G032100--Sobic001G149800 Sobic001G309600 Sobic001G309600 Sobic010G032100--Sobic001G309600 Sobic006G032700 Sobic006G032700 Sobic010G032100--Sobic006G032700 Sobic010G032100--Sobic003G394400 Sobic001G481500 Sobic001G481500 Sobic010G032100--Sobic001G481500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.