Gene annotation
Transcriptome id Sobic.007G026600.2,Sobic.007G026600.3,Sobic.007G026600.1
Synonym Sb07g002330
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
kelch repeat protein, putative, expressed
UniProt A0A1Z5R7T3 , A0A1B6PF81
Pfam PF01344 PF13418
Panther DB PTHR24413 PTHR24413:SF132
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G51540 : Galactose oxidase/kelch repeat superfamily protein
RAP-DB (Rice) LOC_Os08g03420.1 : kelch repeat protein, putative, expressed
MaizeGDB (Corn) Zm00025a030203
Brachypodium -
Barley HORVU7Hr1G074530.10 , HORVU7Hr1G074530.12 , HORVU7Hr1G074530.13 , HORVU7Hr1G074530.14 , HORVU7Hr1G074530.15 , HORVU7Hr1G074530.16 , HORVU7Hr1G074530.17 , HORVU7Hr1G074530.18 , HORVU7Hr1G074530.19 , HORVU7Hr1G074530.2 , HORVU7Hr1G074530.3 , HORVU7Hr1G074530.6 , HORVU7Hr1G074530.7 , HORVU7Hr1G074530.4 , HORVU7Hr1G074530.5 , HORVU7Hr1G074530.9 , HORVU7Hr1G074530.25 , HORVU7Hr1G074530.24 , HORVU7Hr1G074530.21 , HORVU7Hr1G074530.20 , HORVU7Hr1G074530.23 , HORVU7Hr1G074530.22
Wheat TraesCS7D02G308600 , TraesCS7B02G211900 , TraesCS7A02G312200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
2 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
3 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
4 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
6 Sobic.004G280200 tobamovirus multiplication protein, putative, expressed -
7 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.003G394400 ubiquitin family protein, putative, expressed -
9 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
10 Sobic.001G149800 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
11 Sobic.004G166200 expressed protein -
12 Sobic.009G169000 thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K01568: PDC, pyruvate decarboxylase
13 Sobic.002G261200 expressed protein -
14 Sobic.001G397200 universal stress protein domain containing protein, putative, expressed -
15 Sobic.001G481600 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
16 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
17 Sobic.003G377100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
18 Sobic.010G032100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
19 Sobic.007G214400 EF hand family protein, putative, expressed -
20 Sobic.005G103500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dehydrogenase, putative, expressed -


Gene co-expression network
sample Sobic007G026600 Sobic007G026600 Sobic002G068600 Sobic002G068600 Sobic007G026600--Sobic002G068600 Sobic001G405500 Sobic001G405500 Sobic007G026600--Sobic001G405500 Sobic003G148600 Sobic003G148600 Sobic007G026600--Sobic003G148600 Sobic001G107800 Sobic001G107800 Sobic007G026600--Sobic001G107800 Sobic003G086600 Sobic003G086600 Sobic007G026600--Sobic003G086600 Sobic004G280200 Sobic004G280200 Sobic007G026600--Sobic004G280200 Sobic003G123600 Sobic003G123600 Sobic007G026600--Sobic003G123600 Sobic003G394400 Sobic003G394400 Sobic007G026600--Sobic003G394400 Sobic003G144700 Sobic003G144700 Sobic007G026600--Sobic003G144700 Sobic002G068600--Sobic003G394400 Sobic002G068600--Sobic003G086600 Sobic004G166200 Sobic004G166200 Sobic002G068600--Sobic004G166200 Sobic001G254100 Sobic001G254100 Sobic002G068600--Sobic001G254100 Sobic002G068600--Sobic001G107800 Sobic002G261200 Sobic002G261200 Sobic002G068600--Sobic002G261200 Sobic002G068600--Sobic007G026600 Sobic007G214400 Sobic007G214400 Sobic002G068600--Sobic007G214400 Sobic010G032100 Sobic010G032100 Sobic002G068600--Sobic010G032100 Sobic001G405500--Sobic003G086600 Sobic001G405500--Sobic003G148600 Sobic001G405500--Sobic003G394400 Sobic001G108200 Sobic001G108200 Sobic001G405500--Sobic001G108200 Sobic001G405500--Sobic007G026600 Sobic001G405500--Sobic003G144700 Sobic003G355100 Sobic003G355100 Sobic001G405500--Sobic003G355100 Sobic003G382800 Sobic003G382800 Sobic001G405500--Sobic003G382800 Sobic006G267200 Sobic006G267200 Sobic001G405500--Sobic006G267200 Sobic003G197200 Sobic003G197200 Sobic003G148600--Sobic003G197200 Sobic003G148600--Sobic003G123600 Sobic003G148600--Sobic003G144700 Sobic003G148600--Sobic003G355100 Sobic007G214600 Sobic007G214600 Sobic003G148600--Sobic007G214600 Sobic003G148600--Sobic004G166200 Sobic003G148600--Sobic001G107800 Sobic003G148600--Sobic001G405500 Sobic003G148600--Sobic003G394400 Sobic001G107800--Sobic003G123600 Sobic001G107800--Sobic003G394400 Sobic001G107800--Sobic007G214400 Sobic001G107800--Sobic003G148600 Sobic001G107800--Sobic002G261200 Sobic001G371800 Sobic001G371800 Sobic001G107800--Sobic001G371800 Sobic001G107800--Sobic001G254100 Sobic001G107800--Sobic003G197200 Sobic001G107800--Sobic002G068600 Sobic003G086600--Sobic002G068600 Sobic003G086600--Sobic003G394400 Sobic003G086600--Sobic001G405500 Sobic003G086600--Sobic001G108200 Sobic003G086600--Sobic004G166200 Sobic003G086600--Sobic003G382800 Sobic003G086600--Sobic003G355100 Sobic001G397200 Sobic001G397200 Sobic003G086600--Sobic001G397200 Sobic003G086600--Sobic007G026600 Sobic009G169000 Sobic009G169000 Sobic004G280200--Sobic009G169000 Sobic004G280200--Sobic001G405500 Sobic003G369100 Sobic003G369100 Sobic004G280200--Sobic003G369100 Sobic004G280200--Sobic007G026600 Sobic004G280200--Sobic003G086600 Sobic003G367200 Sobic003G367200 Sobic004G280200--Sobic003G367200 Sobic004G280200--Sobic003G144700 Sobic006G275200 Sobic006G275200 Sobic004G280200--Sobic006G275200 Sobic004G280200--Sobic002G261200 Sobic003G123600--Sobic003G148600 Sobic003G123600--Sobic001G107800 Sobic002G415600 Sobic002G415600 Sobic003G123600--Sobic002G415600 Sobic003G123600--Sobic003G197200 Sobic003G123600--Sobic003G144700 Sobic001G076100 Sobic001G076100 Sobic003G123600--Sobic001G076100 Sobic006G230800 Sobic006G230800 Sobic003G123600--Sobic006G230800 Sobic006G190500 Sobic006G190500 Sobic003G123600--Sobic006G190500 Sobic001G443800 Sobic001G443800 Sobic003G123600--Sobic001G443800 Sobic003G394400--Sobic002G068600 Sobic003G394400--Sobic007G214400 Sobic003G394400--Sobic003G086600 Sobic003G394400--Sobic001G371800 Sobic003G394400--Sobic004G166200 Sobic003G394400--Sobic001G107800 Sobic003G394400--Sobic003G355100 Sobic003G394400--Sobic003G148600 Sobic003G394400--Sobic007G214600 Sobic003G144700--Sobic003G197200 Sobic003G144700--Sobic003G148600 Sobic007G213800 Sobic007G213800 Sobic003G144700--Sobic007G213800 Sobic001G320900 Sobic001G320900 Sobic003G144700--Sobic001G320900 Sobic003G144700--Sobic003G355100 Sobic001G391500 Sobic001G391500 Sobic003G144700--Sobic001G391500 Sobic003G144700--Sobic009G169000 Sobic003G144700--Sobic003G123600 Sobic006G230900 Sobic006G230900 Sobic003G144700--Sobic006G230900
Octagon: transcription factors


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