Gene annotation
Transcriptome id Sobic.001G481600.2
Synonym Sb01g045070, ethylene response factor 12, HRE1, SbERF12
Functional annotation Not investigated (PubMedID : 23766026)
AP2 domain containing protein, expressed
UniProt A0A1Z5SB32
Pfam PF00847
Panther DB PTHR31190 PTHR31190:SF21
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G72360 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g08470.2 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a000948
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G481600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G309600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type, domain containing protein, expressed -
2 Sobic.007G026600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
3 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
4 Sobic.001G397200 universal stress protein domain containing protein, putative, expressed -
5 Sobic.005G103500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dehydrogenase, putative, expressed -
6 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.001G149800 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
8 Sobic.003G377100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
9 Sobic.009G111200 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
10 Sobic.002G415600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed K09286: EREBP-like factor
11 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
12 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
13 Sobic.010G217800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
14 Sobic.001G481500 - -
15 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
16 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
17 Sobic.006G032700 rhodanese-like domain containing protein, putative, expressed -
18 Sobic.004G166200 expressed protein -
19 Sobic.010G032100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@early nodulin 93 ENOD93 protein, putative, expressed -
20 Sobic.004G280200 tobamovirus multiplication protein, putative, expressed -


Gene co-expression network
sample Sobic001G481600 Sobic001G481600 Sobic001G309600 Sobic001G309600 Sobic001G481600--Sobic001G309600 Sobic007G026600 Sobic007G026600 Sobic001G481600--Sobic007G026600 Sobic001G405500 Sobic001G405500 Sobic001G481600--Sobic001G405500 Sobic001G397200 Sobic001G397200 Sobic001G481600--Sobic001G397200 Sobic005G103500 Sobic005G103500 Sobic001G481600--Sobic005G103500 Sobic003G123600 Sobic003G123600 Sobic001G481600--Sobic003G123600 Sobic001G149800 Sobic001G149800 Sobic001G481600--Sobic001G149800 Sobic003G377100 Sobic003G377100 Sobic001G481600--Sobic003G377100 Sobic009G111200 Sobic009G111200 Sobic001G481600--Sobic009G111200 Sobic001G309600--Sobic001G397200 Sobic001G481500 Sobic001G481500 Sobic001G309600--Sobic001G481500 Sobic010G032100 Sobic010G032100 Sobic001G309600--Sobic010G032100 Sobic006G032700 Sobic006G032700 Sobic001G309600--Sobic006G032700 Sobic001G309600--Sobic001G149800 Sobic003G138300 Sobic003G138300 Sobic001G309600--Sobic003G138300 Sobic003G086600 Sobic003G086600 Sobic001G309600--Sobic003G086600 Sobic002G215300 Sobic002G215300 Sobic001G309600--Sobic002G215300 Sobic001G309600--Sobic001G481600 Sobic002G068600 Sobic002G068600 Sobic007G026600--Sobic002G068600 Sobic007G026600--Sobic001G405500 Sobic003G148600 Sobic003G148600 Sobic007G026600--Sobic003G148600 Sobic001G107800 Sobic001G107800 Sobic007G026600--Sobic001G107800 Sobic007G026600--Sobic003G086600 Sobic004G280200 Sobic004G280200 Sobic007G026600--Sobic004G280200 Sobic007G026600--Sobic003G123600 Sobic003G394400 Sobic003G394400 Sobic007G026600--Sobic003G394400 Sobic003G144700 Sobic003G144700 Sobic007G026600--Sobic003G144700 Sobic001G405500--Sobic003G086600 Sobic001G405500--Sobic003G148600 Sobic001G405500--Sobic003G394400 Sobic001G108200 Sobic001G108200 Sobic001G405500--Sobic001G108200 Sobic001G405500--Sobic007G026600 Sobic001G405500--Sobic003G144700 Sobic003G355100 Sobic003G355100 Sobic001G405500--Sobic003G355100 Sobic003G382800 Sobic003G382800 Sobic001G405500--Sobic003G382800 Sobic006G267200 Sobic006G267200 Sobic001G405500--Sobic006G267200 Sobic001G397200--Sobic010G032100 Sobic001G397200--Sobic001G309600 Sobic001G397200--Sobic006G032700 Sobic001G397200--Sobic001G481500 Sobic001G397200--Sobic003G086600 Sobic008G070350 Sobic008G070350 Sobic001G397200--Sobic008G070350 Sobic001G397200--Sobic002G068600 Sobic003G367200 Sobic003G367200 Sobic001G397200--Sobic003G367200 Sobic001G397200--Sobic007G026600 Sobic005G103500--Sobic001G405500 Sobic005G103500--Sobic001G397200 Sobic005G103300 Sobic005G103300 Sobic005G103500--Sobic005G103300 Sobic005G103500--Sobic001G481600 Sobic005G103500--Sobic007G026600 Sobic005G103500--Sobic001G309600 Sobic005G103500--Sobic008G070350 Sobic003G387000 Sobic003G387000 Sobic005G103500--Sobic003G387000 Sobic005G103500--Sobic006G032700 Sobic003G123600--Sobic003G148600 Sobic003G123600--Sobic001G107800 Sobic002G415600 Sobic002G415600 Sobic003G123600--Sobic002G415600 Sobic003G197200 Sobic003G197200 Sobic003G123600--Sobic003G197200 Sobic003G123600--Sobic003G144700 Sobic001G076100 Sobic001G076100 Sobic003G123600--Sobic001G076100 Sobic006G230800 Sobic006G230800 Sobic003G123600--Sobic006G230800 Sobic006G190500 Sobic006G190500 Sobic003G123600--Sobic006G190500 Sobic001G443800 Sobic001G443800 Sobic003G123600--Sobic001G443800 Sobic001G149800--Sobic010G032100 Sobic001G149800--Sobic002G068600 Sobic010G031100 Sobic010G031100 Sobic001G149800--Sobic010G031100 Sobic001G149800--Sobic003G394400 Sobic001G149800--Sobic003G086600 Sobic001G254100 Sobic001G254100 Sobic001G149800--Sobic001G254100 Sobic001G149800--Sobic001G107800 Sobic001G149800--Sobic001G481500 Sobic001G149800--Sobic001G309600 Sobic003G377100--Sobic003G148600 Sobic003G377100--Sobic002G068600 Sobic003G377100--Sobic003G086600 Sobic003G377100--Sobic001G405500 Sobic008G118700 Sobic008G118700 Sobic003G377100--Sobic008G118700 Sobic004G166200 Sobic004G166200 Sobic003G377100--Sobic004G166200 Sobic003G377100--Sobic003G355100 Sobic003G377100--Sobic001G108200 Sobic003G377100--Sobic003G197200 Sobic009G111200--Sobic006G190500 Sobic009G111200--Sobic002G415600 Sobic009G111200--Sobic006G230800 Sobic009G111200--Sobic001G481600 Sobic009G111200--Sobic003G123600 Sobic005G010200 Sobic005G010200 Sobic009G111200--Sobic005G010200 Sobic006G231200 Sobic006G231200 Sobic009G111200--Sobic006G231200 Sobic009G111200--Sobic005G103500 Sobic010G217800 Sobic010G217800 Sobic009G111200--Sobic010G217800
Octagon: transcription factors


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