Gene annotation
Transcriptome id Sobic.004G280200.1
Synonym THH1, Sb04g031680
Functional annotation tobamovirus multiplication protein, putative, expressed
UniProt A0A194YRY8
Pfam PF06454
Panther DB PTHR31142 PTHR31142:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G02180 : tobamovirus multiplication protein 3
RAP-DB (Rice) LOC_Os02g45870.1 : tobamovirus multiplication protein, putative, expressed
MaizeGDB (Corn) Zm00025a021546
Brachypodium KQK00796
Barley HORVU6Hr1G066210.15 , HORVU6Hr1G066210.12
Wheat TraesCS6A02G259800 , TraesCS6B02G287100 , TraesCS6D02G240800
Populus -


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cDNA sequences
Sobic.004G280200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G169000 thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K01568: PDC, pyruvate decarboxylase
2 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
3 Sobic.003G369100 AP2 domain containing protein, expressed -
4 Sobic.007G026600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
5 Sobic.003G086600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
6 Sobic.003G367200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed K19040: E3 ubiquitin-protein ligase ATL10/75/76/77/78
7 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
8 Sobic.006G275200 CHCH domain containing protein, expressed -
9 Sobic.002G261200 expressed protein -
10 Sobic.003G394400 ubiquitin family protein, putative, expressed -
11 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
12 Sobic.006G267200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
13 Sobic.001G108200 expressed protein -
14 Sobic.007G214400 EF hand family protein, putative, expressed -
15 Sobic.002G068600 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
16 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
17 Sobic.003G387000 expressed protein -
18 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
19 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic004G280200 Sobic004G280200 Sobic009G169000 Sobic009G169000 Sobic004G280200--Sobic009G169000 Sobic001G405500 Sobic001G405500 Sobic004G280200--Sobic001G405500 Sobic003G369100 Sobic003G369100 Sobic004G280200--Sobic003G369100 Sobic007G026600 Sobic007G026600 Sobic004G280200--Sobic007G026600 Sobic003G086600 Sobic003G086600 Sobic004G280200--Sobic003G086600 Sobic003G367200 Sobic003G367200 Sobic004G280200--Sobic003G367200 Sobic003G144700 Sobic003G144700 Sobic004G280200--Sobic003G144700 Sobic006G275200 Sobic006G275200 Sobic004G280200--Sobic006G275200 Sobic002G261200 Sobic002G261200 Sobic004G280200--Sobic002G261200 Sobic001G320900 Sobic001G320900 Sobic009G169000--Sobic001G320900 Sobic009G169000--Sobic003G144700 Sobic009G169000--Sobic004G280200 Sobic003G197200 Sobic003G197200 Sobic009G169000--Sobic003G197200 Sobic003G355100 Sobic003G355100 Sobic009G169000--Sobic003G355100 Sobic007G214600 Sobic007G214600 Sobic009G169000--Sobic007G214600 Sobic003G148600 Sobic003G148600 Sobic009G169000--Sobic003G148600 Sobic001G107800 Sobic001G107800 Sobic009G169000--Sobic001G107800 Sobic009G169000--Sobic007G026600 Sobic001G405500--Sobic003G086600 Sobic001G405500--Sobic003G148600 Sobic003G394400 Sobic003G394400 Sobic001G405500--Sobic003G394400 Sobic001G108200 Sobic001G108200 Sobic001G405500--Sobic001G108200 Sobic001G405500--Sobic007G026600 Sobic001G405500--Sobic003G144700 Sobic001G405500--Sobic003G355100 Sobic003G382800 Sobic003G382800 Sobic001G405500--Sobic003G382800 Sobic006G267200 Sobic006G267200 Sobic001G405500--Sobic006G267200 Sobic004G141200 Sobic004G141200 Sobic003G369100--Sobic004G141200 Sobic007G074000 Sobic007G074000 Sobic003G369100--Sobic007G074000 Sobic001G138600 Sobic001G138600 Sobic003G369100--Sobic001G138600 Sobic003G369100--Sobic001G108200 Sobic001G140900 Sobic001G140900 Sobic003G369100--Sobic001G140900 Sobic001G112200 Sobic001G112200 Sobic003G369100--Sobic001G112200 Sobic003G345100 Sobic003G345100 Sobic003G369100--Sobic003G345100 Sobic008G050600 Sobic008G050600 Sobic003G369100--Sobic008G050600 Sobic001G308300 Sobic001G308300 Sobic003G369100--Sobic001G308300 Sobic002G068600 Sobic002G068600 Sobic007G026600--Sobic002G068600 Sobic007G026600--Sobic001G405500 Sobic007G026600--Sobic003G148600 Sobic007G026600--Sobic001G107800 Sobic007G026600--Sobic003G086600 Sobic007G026600--Sobic004G280200 Sobic003G123600 Sobic003G123600 Sobic007G026600--Sobic003G123600 Sobic007G026600--Sobic003G394400 Sobic007G026600--Sobic003G144700 Sobic003G086600--Sobic002G068600 Sobic003G086600--Sobic003G394400 Sobic003G086600--Sobic001G405500 Sobic003G086600--Sobic001G108200 Sobic004G166200 Sobic004G166200 Sobic003G086600--Sobic004G166200 Sobic003G086600--Sobic003G382800 Sobic003G086600--Sobic003G355100 Sobic001G397200 Sobic001G397200 Sobic003G086600--Sobic001G397200 Sobic003G086600--Sobic007G026600 Sobic004G336500 Sobic004G336500 Sobic003G367200--Sobic004G336500 Sobic003G367200--Sobic006G275200 Sobic003G367200--Sobic003G086600 Sobic003G367200--Sobic003G382800 Sobic003G367200--Sobic001G397200 Sobic003G367200--Sobic004G280200 Sobic007G015600 Sobic007G015600 Sobic003G367200--Sobic007G015600 Sobic003G367200--Sobic001G140900 Sobic003G367200--Sobic003G369100 Sobic003G144700--Sobic003G197200 Sobic003G144700--Sobic003G148600 Sobic007G213800 Sobic007G213800 Sobic003G144700--Sobic007G213800 Sobic003G144700--Sobic001G320900 Sobic003G144700--Sobic003G355100 Sobic001G391500 Sobic001G391500 Sobic003G144700--Sobic001G391500 Sobic003G144700--Sobic009G169000 Sobic003G144700--Sobic003G123600 Sobic006G230900 Sobic006G230900 Sobic003G144700--Sobic006G230900 Sobic008G136400 Sobic008G136400 Sobic006G275200--Sobic008G136400 Sobic002G393000 Sobic002G393000 Sobic006G275200--Sobic002G393000 Sobic009G008900 Sobic009G008900 Sobic006G275200--Sobic009G008900 Sobic006G173900 Sobic006G173900 Sobic006G275200--Sobic006G173900 Sobic001G097600 Sobic001G097600 Sobic006G275200--Sobic001G097600 Sobic001G119400 Sobic001G119400 Sobic006G275200--Sobic001G119400 Sobic006G275200--Sobic003G367200 Sobic001G317000 Sobic001G317000 Sobic006G275200--Sobic001G317000 Sobic001G038900 Sobic001G038900 Sobic006G275200--Sobic001G038900 Sobic002G261200--Sobic001G107800 Sobic002G261200--Sobic002G068600 Sobic001G254100 Sobic001G254100 Sobic002G261200--Sobic001G254100 Sobic010G032100 Sobic010G032100 Sobic002G261200--Sobic010G032100 Sobic002G261200--Sobic003G394400 Sobic002G261200--Sobic004G166200 Sobic002G389000 Sobic002G389000 Sobic002G261200--Sobic002G389000 Sobic007G214400 Sobic007G214400 Sobic002G261200--Sobic007G214400 Sobic001G149800 Sobic001G149800 Sobic002G261200--Sobic001G149800
Octagon: transcription factors


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