Gene annotation
Transcriptome id Sobic.001G320900.1,Sobic.001G320900.2
Synonym Sb01g031150
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
MATE efflux family protein, putative, expressed
UniProt C5WUL4 , A0A1Z5S973
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF157
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G52050 : MATE efflux family protein
RAP-DB (Rice) LOC_Os10g37920.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a056760 , Zm00025a010158 , Zm00025a003086 , Zm00025a021500
Brachypodium PNT77806 , PNT77807 , KQJ84119 , KQJ97526 , KQK17997 , KQK00755 , KQK22742 , KQK22741
Barley HORVU2Hr1G094870.1 , HORVU2Hr1G094870.2 , HORVU2Hr1G094870.3 , HORVU2Hr1G094870.4 , HORVU2Hr1G094870.5 , HORVU0Hr1G025760.4 , HORVU0Hr1G025760.5 , HORVU0Hr1G025760.2 , HORVU0Hr1G025760.3 , HORVU0Hr1G025760.1 , HORVU6Hr1G065390.1 , HORVU6Hr1G065390.3 , HORVU6Hr1G065390.2 , HORVU6Hr1G065390.5 , HORVU6Hr1G065390.4 , HORVU5Hr1G118820.2 , HORVU5Hr1G118820.1 , HORVU5Hr1G118820.4
Wheat TraesCS5B02G522900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G036000 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
2 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
3 Sobic.009G169000 thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K01568: PDC, pyruvate decarboxylase
4 Sobic.001G391500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
6 Sobic.009G036100 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
7 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
8 Sobic.003G355100 expressed protein -
9 Sobic.001G405500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed K01568: PDC, pyruvate decarboxylase
10 Sobic.007G214600 EF hand family protein, putative, expressed -
11 Sobic.006G267200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
12 Sobic.001G108200 expressed protein -
13 Sobic.007G213800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
14 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
15 Sobic.001G459800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
16 Sobic.003G369100 AP2 domain containing protein, expressed -
17 Sobic.006G231200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
18 Sobic.003G393900 Fructose-bisphosphate aldolase(PubMedID : 26186930)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
19 Sobic.002G282300 expressed protein -
20 Sobic.007G026600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -


Gene co-expression network
sample Sobic001G320900 Sobic001G320900 Sobic009G036000 Sobic009G036000 Sobic001G320900--Sobic009G036000 Sobic003G144700 Sobic003G144700 Sobic001G320900--Sobic003G144700 Sobic009G169000 Sobic009G169000 Sobic001G320900--Sobic009G169000 Sobic001G391500 Sobic001G391500 Sobic001G320900--Sobic001G391500 Sobic003G148600 Sobic003G148600 Sobic001G320900--Sobic003G148600 Sobic009G036100 Sobic009G036100 Sobic001G320900--Sobic009G036100 Sobic003G197200 Sobic003G197200 Sobic001G320900--Sobic003G197200 Sobic003G355100 Sobic003G355100 Sobic001G320900--Sobic003G355100 Sobic001G405500 Sobic001G405500 Sobic001G320900--Sobic001G405500 Sobic009G036000--Sobic001G320900 Sobic009G036000--Sobic009G036100 Sobic009G247900 Sobic009G247900 Sobic009G036000--Sobic009G247900 Sobic001G383700 Sobic001G383700 Sobic009G036000--Sobic001G383700 Sobic003G364600 Sobic003G364600 Sobic009G036000--Sobic003G364600 Sobic007G074000 Sobic007G074000 Sobic009G036000--Sobic007G074000 Sobic001G308300 Sobic001G308300 Sobic009G036000--Sobic001G308300 Sobic009G036000--Sobic001G391500 Sobic004G169200 Sobic004G169200 Sobic009G036000--Sobic004G169200 Sobic003G144700--Sobic003G197200 Sobic003G144700--Sobic003G148600 Sobic007G213800 Sobic007G213800 Sobic003G144700--Sobic007G213800 Sobic003G144700--Sobic001G320900 Sobic003G144700--Sobic003G355100 Sobic003G144700--Sobic001G391500 Sobic003G144700--Sobic009G169000 Sobic003G123600 Sobic003G123600 Sobic003G144700--Sobic003G123600 Sobic006G230900 Sobic006G230900 Sobic003G144700--Sobic006G230900 Sobic009G169000--Sobic001G320900 Sobic009G169000--Sobic003G144700 Sobic004G280200 Sobic004G280200 Sobic009G169000--Sobic004G280200 Sobic009G169000--Sobic003G197200 Sobic009G169000--Sobic003G355100 Sobic007G214600 Sobic007G214600 Sobic009G169000--Sobic007G214600 Sobic009G169000--Sobic003G148600 Sobic001G107800 Sobic001G107800 Sobic009G169000--Sobic001G107800 Sobic007G026600 Sobic007G026600 Sobic009G169000--Sobic007G026600 Sobic001G459800 Sobic001G459800 Sobic001G391500--Sobic001G459800 Sobic004G141200 Sobic004G141200 Sobic001G391500--Sobic004G141200 Sobic001G391500--Sobic003G144700 Sobic001G391500--Sobic007G213800 Sobic001G391500--Sobic001G320900 Sobic001G391500--Sobic003G148600 Sobic003G369100 Sobic003G369100 Sobic001G391500--Sobic003G369100 Sobic001G138600 Sobic001G138600 Sobic001G391500--Sobic001G138600 Sobic001G391500--Sobic007G074000 Sobic003G148600--Sobic003G197200 Sobic003G148600--Sobic003G123600 Sobic003G148600--Sobic003G144700 Sobic003G148600--Sobic003G355100 Sobic003G148600--Sobic007G214600 Sobic004G166200 Sobic004G166200 Sobic003G148600--Sobic004G166200 Sobic003G148600--Sobic001G107800 Sobic003G148600--Sobic001G405500 Sobic003G394400 Sobic003G394400 Sobic003G148600--Sobic003G394400 Sobic009G036100--Sobic009G036000 Sobic009G036100--Sobic007G074000 Sobic009G036100--Sobic001G320900 Sobic001G407800 Sobic001G407800 Sobic009G036100--Sobic001G407800 Sobic009G036100--Sobic009G247900 Sobic002G140300 Sobic002G140300 Sobic009G036100--Sobic002G140300 Sobic009G036100--Sobic003G369100 Sobic003G324400 Sobic003G324400 Sobic009G036100--Sobic003G324400 Sobic001G258300 Sobic001G258300 Sobic009G036100--Sobic001G258300 Sobic003G197200--Sobic003G148600 Sobic003G197200--Sobic007G214600 Sobic003G197200--Sobic003G355100 Sobic003G197200--Sobic003G144700 Sobic001G443800 Sobic001G443800 Sobic003G197200--Sobic001G443800 Sobic001G481300 Sobic001G481300 Sobic003G197200--Sobic001G481300 Sobic001G201200 Sobic001G201200 Sobic003G197200--Sobic001G201200 Sobic004G109600 Sobic004G109600 Sobic003G197200--Sobic004G109600 Sobic003G197200--Sobic003G123600 Sobic003G355100--Sobic007G214600 Sobic003G355100--Sobic003G197200 Sobic003G355100--Sobic001G481300 Sobic003G355100--Sobic003G148600 Sobic003G355100--Sobic004G109600 Sobic003G355100--Sobic003G394400 Sobic001G108200 Sobic001G108200 Sobic003G355100--Sobic001G108200 Sobic003G355100--Sobic003G144700 Sobic003G355100--Sobic004G166200 Sobic003G086600 Sobic003G086600 Sobic001G405500--Sobic003G086600 Sobic001G405500--Sobic003G148600 Sobic001G405500--Sobic003G394400 Sobic001G405500--Sobic001G108200 Sobic001G405500--Sobic007G026600 Sobic001G405500--Sobic003G144700 Sobic001G405500--Sobic003G355100 Sobic003G382800 Sobic003G382800 Sobic001G405500--Sobic003G382800 Sobic006G267200 Sobic006G267200 Sobic001G405500--Sobic006G267200
Octagon: transcription factors


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