Gene annotation
Transcriptome id Sobic.009G036100.1
Synonym RCI2A, Sb09g003060
Functional annotation similar to Hydrophobic protein LTI6B (PubMedID : 29862293)
OsRCI2-6 - Hydrophobic protein LTI6B, expressed
UniProt C5YZL6
Pfam PF01679
Panther DB PTHR21659 PTHR21659:SF24
NCBI CDD KOG1773; Stress responsive protein
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G05880 : Low temperature and salt responsive protein family
RAP-DB (Rice) LOC_Os05g04700.1 : OsRCI2-6 - Hydrophobic protein LTI6B, expressed
MaizeGDB (Corn) -
Brachypodium KQK15031
Barley HORVU2Hr1G027430.2 , HORVU2Hr1G027430.3 , HORVU2Hr1G027430.1
Wheat TraesCS2D02G157100 , TraesCS2B02G177100 , TraesCS2A02G152000
Populus -


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cDNA sequences
Sobic.009G036100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G036000 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
2 Sobic.007G074000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- -
3 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
4 Sobic.001G407800 leucoanthocyanidin dioxygenase, putative, expressed -
5 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
6 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.003G369100 AP2 domain containing protein, expressed -
8 Sobic.003G324400 Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed -
9 Sobic.001G258300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
10 Sobic.004G065500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
11 Sobic.006G231200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
12 Sobic.001G391500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
13 Sobic.001G040200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAC domain-containing protein 67, putative, expressed -
14 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
15 Sobic.006G056400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
16 Sobic.009G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
17 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
18 Sobic.004G169200 U-box domain-containing protein, putative, expressed -
19 Sobic.002G082600 DUF567 domain containing protein, putative, expressed -
20 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase


Gene co-expression network
sample Sobic009G036100 Sobic009G036100 Sobic009G036000 Sobic009G036000 Sobic009G036100--Sobic009G036000 Sobic007G074000 Sobic007G074000 Sobic009G036100--Sobic007G074000 Sobic001G320900 Sobic001G320900 Sobic009G036100--Sobic001G320900 Sobic001G407800 Sobic001G407800 Sobic009G036100--Sobic001G407800 Sobic009G247900 Sobic009G247900 Sobic009G036100--Sobic009G247900 Sobic002G140300 Sobic002G140300 Sobic009G036100--Sobic002G140300 Sobic003G369100 Sobic003G369100 Sobic009G036100--Sobic003G369100 Sobic003G324400 Sobic003G324400 Sobic009G036100--Sobic003G324400 Sobic001G258300 Sobic001G258300 Sobic009G036100--Sobic001G258300 Sobic009G036000--Sobic001G320900 Sobic009G036000--Sobic009G036100 Sobic009G036000--Sobic009G247900 Sobic001G383700 Sobic001G383700 Sobic009G036000--Sobic001G383700 Sobic003G364600 Sobic003G364600 Sobic009G036000--Sobic003G364600 Sobic009G036000--Sobic007G074000 Sobic001G308300 Sobic001G308300 Sobic009G036000--Sobic001G308300 Sobic001G391500 Sobic001G391500 Sobic009G036000--Sobic001G391500 Sobic004G169200 Sobic004G169200 Sobic009G036000--Sobic004G169200 Sobic007G074000--Sobic003G369100 Sobic004G141200 Sobic004G141200 Sobic007G074000--Sobic004G141200 Sobic004G237800 Sobic004G237800 Sobic007G074000--Sobic004G237800 Sobic002G140400 Sobic002G140400 Sobic007G074000--Sobic002G140400 Sobic003G228900 Sobic003G228900 Sobic007G074000--Sobic003G228900 Sobic002G336600 Sobic002G336600 Sobic007G074000--Sobic002G336600 Sobic007G074000--Sobic003G364600 Sobic001G138600 Sobic001G138600 Sobic007G074000--Sobic001G138600 Sobic007G074000--Sobic009G247900 Sobic001G320900--Sobic009G036000 Sobic003G144700 Sobic003G144700 Sobic001G320900--Sobic003G144700 Sobic009G169000 Sobic009G169000 Sobic001G320900--Sobic009G169000 Sobic001G320900--Sobic001G391500 Sobic003G148600 Sobic003G148600 Sobic001G320900--Sobic003G148600 Sobic001G320900--Sobic009G036100 Sobic003G197200 Sobic003G197200 Sobic001G320900--Sobic003G197200 Sobic003G355100 Sobic003G355100 Sobic001G320900--Sobic003G355100 Sobic001G405500 Sobic001G405500 Sobic001G320900--Sobic001G405500 Sobic002G333400 Sobic002G333400 Sobic001G407800--Sobic002G333400 Sobic001G407800--Sobic009G036100 Sobic006G056400 Sobic006G056400 Sobic001G407800--Sobic006G056400 Sobic001G407800--Sobic004G237800 Sobic001G407800--Sobic007G074000 Sobic005G186100 Sobic005G186100 Sobic001G407800--Sobic005G186100 Sobic010G259300 Sobic010G259300 Sobic001G407800--Sobic010G259300 Sobic001G407800--Sobic003G369100 Sobic008G139600 Sobic008G139600 Sobic001G407800--Sobic008G139600 Sobic009G247900--Sobic007G074000 Sobic003G202200 Sobic003G202200 Sobic009G247900--Sobic003G202200 Sobic009G247900--Sobic001G383700 Sobic009G247900--Sobic003G228900 Sobic003G428700 Sobic003G428700 Sobic009G247900--Sobic003G428700 Sobic010G209200 Sobic010G209200 Sobic009G247900--Sobic010G209200 Sobic009G247900--Sobic009G036100 Sobic009G247900--Sobic009G036000 Sobic004G341800 Sobic004G341800 Sobic009G247900--Sobic004G341800 Sobic006G179500 Sobic006G179500 Sobic002G140300--Sobic006G179500 Sobic001G040200 Sobic001G040200 Sobic002G140300--Sobic001G040200 Sobic006G165100 Sobic006G165100 Sobic002G140300--Sobic006G165100 Sobic004G222500 Sobic004G222500 Sobic002G140300--Sobic004G222500 Sobic001G538866 Sobic001G538866 Sobic002G140300--Sobic001G538866 Sobic002G140300--Sobic009G036100 Sobic006G183400 Sobic006G183400 Sobic002G140300--Sobic006G183400 Sobic002G140300--Sobic003G324400 Sobic002G140300--Sobic009G247900 Sobic003G369100--Sobic004G141200 Sobic003G369100--Sobic007G074000 Sobic003G369100--Sobic001G138600 Sobic001G108200 Sobic001G108200 Sobic003G369100--Sobic001G108200 Sobic001G140900 Sobic001G140900 Sobic003G369100--Sobic001G140900 Sobic001G112200 Sobic001G112200 Sobic003G369100--Sobic001G112200 Sobic003G345100 Sobic003G345100 Sobic003G369100--Sobic003G345100 Sobic008G050600 Sobic008G050600 Sobic003G369100--Sobic008G050600 Sobic003G369100--Sobic001G308300 Sobic003G324400--Sobic006G165100 Sobic003G324400--Sobic001G040200 Sobic003G324400--Sobic002G140300 Sobic003G324400--Sobic009G036100 Sobic006G263600 Sobic006G263600 Sobic003G324400--Sobic006G263600 Sobic003G324400--Sobic009G247900 Sobic002G405600 Sobic002G405600 Sobic003G324400--Sobic002G405600 Sobic003G313800 Sobic003G313800 Sobic003G324400--Sobic003G313800 Sobic002G282300 Sobic002G282300 Sobic003G324400--Sobic002G282300 Sobic001G258300--Sobic009G036100 Sobic001G258300--Sobic004G237800 Sobic001G258300--Sobic007G074000 Sobic009G200700 Sobic009G200700 Sobic001G258300--Sobic009G200700 Sobic002G189100 Sobic002G189100 Sobic001G258300--Sobic002G189100 Sobic001G258300--Sobic002G140300 Sobic001G258300--Sobic001G407800 Sobic009G151600 Sobic009G151600 Sobic001G258300--Sobic009G151600 Sobic006G231200 Sobic006G231200 Sobic001G258300--Sobic006G231200
Octagon: transcription factors


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