Gene annotation
Transcriptome id Sobic.009G247900.1
Synonym Sb09g029860,
Functional annotation similar to Putative late embryogenesis abundant protein (PubMedID : 29862293)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
late embryogenesis abundant protein, putative, expressed
UniProt C5YWI6
Pfam PF03168
Panther DB PTHR31459 PTHR31459:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G46140 : Late embryogenesis abundant protein
RAP-DB (Rice) LOC_Os05g50710.1 : late embryogenesis abundant protein, putative, expressed
MaizeGDB (Corn) Zm00025a036727
Brachypodium KQK04706
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G247900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G074000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@- -
2 Sobic.003G202200 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
3 Sobic.001G383700 OsCML27 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
4 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
5 Sobic.003G428700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.010G209200 WRKY28, expressed -
7 Sobic.009G036100 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
8 Sobic.009G036000 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
9 Sobic.004G341800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin family protein, putative, expressed -
10 Sobic.009G122400 expressed protein -
11 Sobic.006G263600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.004G065500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
13 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -
14 Sobic.006G056400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
15 Sobic.006G231200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
16 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.004G191400 - -
18 Sobic.002G140400 plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.004G222500 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
20 Sobic.001G459800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase


Gene co-expression network
sample Sobic009G247900 Sobic009G247900 Sobic007G074000 Sobic007G074000 Sobic009G247900--Sobic007G074000 Sobic003G202200 Sobic003G202200 Sobic009G247900--Sobic003G202200 Sobic001G383700 Sobic001G383700 Sobic009G247900--Sobic001G383700 Sobic003G228900 Sobic003G228900 Sobic009G247900--Sobic003G228900 Sobic003G428700 Sobic003G428700 Sobic009G247900--Sobic003G428700 Sobic010G209200 Sobic010G209200 Sobic009G247900--Sobic010G209200 Sobic009G036100 Sobic009G036100 Sobic009G247900--Sobic009G036100 Sobic009G036000 Sobic009G036000 Sobic009G247900--Sobic009G036000 Sobic004G341800 Sobic004G341800 Sobic009G247900--Sobic004G341800 Sobic003G369100 Sobic003G369100 Sobic007G074000--Sobic003G369100 Sobic004G141200 Sobic004G141200 Sobic007G074000--Sobic004G141200 Sobic004G237800 Sobic004G237800 Sobic007G074000--Sobic004G237800 Sobic002G140400 Sobic002G140400 Sobic007G074000--Sobic002G140400 Sobic007G074000--Sobic003G228900 Sobic002G336600 Sobic002G336600 Sobic007G074000--Sobic002G336600 Sobic003G364600 Sobic003G364600 Sobic007G074000--Sobic003G364600 Sobic001G138600 Sobic001G138600 Sobic007G074000--Sobic001G138600 Sobic007G074000--Sobic009G247900 Sobic001G481100 Sobic001G481100 Sobic003G202200--Sobic001G481100 Sobic003G202200--Sobic009G247900 Sobic003G202200--Sobic001G383700 Sobic001G449700 Sobic001G449700 Sobic003G202200--Sobic001G449700 Sobic003G021500 Sobic003G021500 Sobic003G202200--Sobic003G021500 Sobic003G202200--Sobic003G228900 Sobic004G191400 Sobic004G191400 Sobic003G202200--Sobic004G191400 Sobic003G202200--Sobic003G364600 Sobic003G202200--Sobic009G036000 Sobic001G383700--Sobic003G202200 Sobic001G383700--Sobic009G247900 Sobic001G383700--Sobic001G449700 Sobic007G149300 Sobic007G149300 Sobic001G383700--Sobic007G149300 Sobic001G383700--Sobic009G036000 Sobic006G263600 Sobic006G263600 Sobic001G383700--Sobic006G263600 Sobic004G169200 Sobic004G169200 Sobic001G383700--Sobic004G169200 Sobic001G383700--Sobic004G191400 Sobic002G395300 Sobic002G395300 Sobic001G383700--Sobic002G395300 Sobic006G075400 Sobic006G075400 Sobic003G228900--Sobic006G075400 Sobic003G228900--Sobic010G209200 Sobic009G184000 Sobic009G184000 Sobic003G228900--Sobic009G184000 Sobic003G228900--Sobic004G191400 Sobic003G432700 Sobic003G432700 Sobic003G228900--Sobic003G432700 Sobic003G260300 Sobic003G260300 Sobic003G228900--Sobic003G260300 Sobic007G017500 Sobic007G017500 Sobic003G228900--Sobic007G017500 Sobic009G122400 Sobic009G122400 Sobic003G228900--Sobic009G122400 Sobic001G079300 Sobic001G079300 Sobic003G228900--Sobic001G079300 Sobic003G428700--Sobic009G122400 Sobic003G428700--Sobic010G209200 Sobic003G428700--Sobic004G191400 Sobic003G428700--Sobic004G169200 Sobic003G093000 Sobic003G093000 Sobic003G428700--Sobic003G093000 Sobic004G222500 Sobic004G222500 Sobic003G428700--Sobic004G222500 Sobic003G428700--Sobic009G247900 Sobic002G220000 Sobic002G220000 Sobic003G428700--Sobic002G220000 Sobic001G035100 Sobic001G035100 Sobic003G428700--Sobic001G035100 Sobic010G209200--Sobic009G122400 Sobic010G209200--Sobic004G191400 Sobic010G209200--Sobic003G428700 Sobic010G209200--Sobic003G228900 Sobic010G209200--Sobic001G079300 Sobic004G191300 Sobic004G191300 Sobic010G209200--Sobic004G191300 Sobic010G209200--Sobic001G138600 Sobic007G213800 Sobic007G213800 Sobic010G209200--Sobic007G213800 Sobic010G209200--Sobic009G184000 Sobic009G036100--Sobic009G036000 Sobic009G036100--Sobic007G074000 Sobic001G320900 Sobic001G320900 Sobic009G036100--Sobic001G320900 Sobic001G407800 Sobic001G407800 Sobic009G036100--Sobic001G407800 Sobic009G036100--Sobic009G247900 Sobic002G140300 Sobic002G140300 Sobic009G036100--Sobic002G140300 Sobic009G036100--Sobic003G369100 Sobic003G324400 Sobic003G324400 Sobic009G036100--Sobic003G324400 Sobic001G258300 Sobic001G258300 Sobic009G036100--Sobic001G258300 Sobic009G036000--Sobic001G320900 Sobic009G036000--Sobic009G036100 Sobic009G036000--Sobic009G247900 Sobic009G036000--Sobic001G383700 Sobic009G036000--Sobic003G364600 Sobic009G036000--Sobic007G074000 Sobic001G308300 Sobic001G308300 Sobic009G036000--Sobic001G308300 Sobic001G391500 Sobic001G391500 Sobic009G036000--Sobic001G391500 Sobic009G036000--Sobic004G169200 Sobic004G341800--Sobic009G247900 Sobic001G471200 Sobic001G471200 Sobic004G341800--Sobic001G471200 Sobic001G322200 Sobic001G322200 Sobic004G341800--Sobic001G322200 Sobic004G341800--Sobic003G428700 Sobic004G341800--Sobic004G222500 Sobic004G341800--Sobic009G122400 Sobic006G183400 Sobic006G183400 Sobic004G341800--Sobic006G183400 Sobic004G341800--Sobic003G228900 Sobic002G189100 Sobic002G189100 Sobic004G341800--Sobic002G189100
Octagon: transcription factors


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