Gene annotation
Transcriptome id Sobic.004G341800.1
Synonym Sb04g036920
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
thioredoxin family protein, putative, expressed
UniProt C5XVT5
Pfam PF05903
Panther DB PTHR12378 PTHR12378:SF16
NCBI CDD KOG0324; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G07090 : PPPDE putative thiol peptidase family protein
RAP-DB (Rice) LOC_Os02g56900.1 : thioredoxin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a022570
Brachypodium KQK01312
Barley -
Wheat TraesCS6D02G369300 , TraesCS6A02G384300
Populus -


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cDNA sequences
Sobic.004G341800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
2 Sobic.001G471200 membrane protein, putative, expressed -
3 Sobic.001G322200 hydrolase, alpha/beta fold family protein, putative, expressed -
4 Sobic.003G428700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.004G222500 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
6 Sobic.009G122400 expressed protein -
7 Sobic.006G183400 OsRhmbd11 - Putative Rhomboid homologue, expressed -
8 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
9 Sobic.002G189100 beta-glucan-binding protein 4, putative, expressed K01180: endo-1,3(4)-beta-glucanase
10 Sobic.002G140300 plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.001G055600 prenylated rab acceptor, putative, expressed -
12 Sobic.004G041900 apoptosis-inducing factor 2, putative, expressed -
13 Sobic.001G267600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@thaumatin, putative, expressed -
14 Sobic.010G223600 ubiquitin family protein, putative, expressed K08770: ubiquitin C
15 Sobic.006G066200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@prephenate dehydratase domain containing protein, expressed K05359: ADT, arogenate/prephenate dehydratase
16 Sobic.001G035100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@ZOS3-21 - C2H2 zinc finger protein, expressed -
17 Sobic.009G192600 Protein tyrosine/DOPA decarboxylase 1 (Os)(PubMedID : 27208977)@decarboxylase, putative, expressed K01592: tyrosine decarboxylase
18 Sobic.003G093000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
19 Sobic.001G390300 OsCam1-1 - Calmodulin, expressed K02183: calmodulin
20 Sobic.010G209200 WRKY28, expressed -


Gene co-expression network
sample Sobic004G341800 Sobic004G341800 Sobic009G247900 Sobic009G247900 Sobic004G341800--Sobic009G247900 Sobic001G471200 Sobic001G471200 Sobic004G341800--Sobic001G471200 Sobic001G322200 Sobic001G322200 Sobic004G341800--Sobic001G322200 Sobic003G428700 Sobic003G428700 Sobic004G341800--Sobic003G428700 Sobic004G222500 Sobic004G222500 Sobic004G341800--Sobic004G222500 Sobic009G122400 Sobic009G122400 Sobic004G341800--Sobic009G122400 Sobic006G183400 Sobic006G183400 Sobic004G341800--Sobic006G183400 Sobic003G228900 Sobic003G228900 Sobic004G341800--Sobic003G228900 Sobic002G189100 Sobic002G189100 Sobic004G341800--Sobic002G189100 Sobic007G074000 Sobic007G074000 Sobic009G247900--Sobic007G074000 Sobic003G202200 Sobic003G202200 Sobic009G247900--Sobic003G202200 Sobic001G383700 Sobic001G383700 Sobic009G247900--Sobic001G383700 Sobic009G247900--Sobic003G228900 Sobic009G247900--Sobic003G428700 Sobic010G209200 Sobic010G209200 Sobic009G247900--Sobic010G209200 Sobic009G036100 Sobic009G036100 Sobic009G247900--Sobic009G036100 Sobic009G036000 Sobic009G036000 Sobic009G247900--Sobic009G036000 Sobic009G247900--Sobic004G341800 Sobic001G471200--Sobic004G341800 Sobic001G035100 Sobic001G035100 Sobic001G471200--Sobic001G035100 Sobic004G228500 Sobic004G228500 Sobic001G471200--Sobic004G228500 Sobic001G471200--Sobic003G228900 Sobic006G103000 Sobic006G103000 Sobic001G471200--Sobic006G103000 Sobic004G219800 Sobic004G219800 Sobic001G471200--Sobic004G219800 Sobic001G471200--Sobic006G183400 Sobic010G223600 Sobic010G223600 Sobic001G471200--Sobic010G223600 Sobic004G243100 Sobic004G243100 Sobic001G471200--Sobic004G243100 Sobic009G248500 Sobic009G248500 Sobic001G322200--Sobic009G248500 Sobic001G322200--Sobic004G341800 Sobic009G027900 Sobic009G027900 Sobic001G322200--Sobic009G027900 Sobic001G267600 Sobic001G267600 Sobic001G322200--Sobic001G267600 Sobic001G322200--Sobic003G228900 Sobic001G322200--Sobic002G189100 Sobic004G041900 Sobic004G041900 Sobic001G322200--Sobic004G041900 Sobic003G049700 Sobic003G049700 Sobic001G322200--Sobic003G049700 Sobic004G065500 Sobic004G065500 Sobic001G322200--Sobic004G065500 Sobic003G428700--Sobic009G122400 Sobic003G428700--Sobic010G209200 Sobic004G191400 Sobic004G191400 Sobic003G428700--Sobic004G191400 Sobic004G169200 Sobic004G169200 Sobic003G428700--Sobic004G169200 Sobic003G093000 Sobic003G093000 Sobic003G428700--Sobic003G093000 Sobic003G428700--Sobic004G222500 Sobic003G428700--Sobic009G247900 Sobic002G220000 Sobic002G220000 Sobic003G428700--Sobic002G220000 Sobic003G428700--Sobic001G035100 Sobic002G140300 Sobic002G140300 Sobic004G222500--Sobic002G140300 Sobic004G222500--Sobic003G093000 Sobic003G092900 Sobic003G092900 Sobic004G222500--Sobic003G092900 Sobic004G222500--Sobic003G428700 Sobic004G222500--Sobic006G183400 Sobic004G222500--Sobic009G247900 Sobic004G222500--Sobic001G035100 Sobic004G222500--Sobic002G220000 Sobic006G179500 Sobic006G179500 Sobic004G222500--Sobic006G179500 Sobic009G122400--Sobic004G191400 Sobic009G122400--Sobic010G209200 Sobic004G191300 Sobic004G191300 Sobic009G122400--Sobic004G191300 Sobic009G122400--Sobic003G428700 Sobic009G122400--Sobic003G228900 Sobic001G079300 Sobic001G079300 Sobic009G122400--Sobic001G079300 Sobic001G330400 Sobic001G330400 Sobic009G122400--Sobic001G330400 Sobic001G256700 Sobic001G256700 Sobic009G122400--Sobic001G256700 Sobic002G388900 Sobic002G388900 Sobic009G122400--Sobic002G388900 Sobic006G183400--Sobic006G179500 Sobic006G183400--Sobic002G140300 Sobic005G196800 Sobic005G196800 Sobic006G183400--Sobic005G196800 Sobic001G247300 Sobic001G247300 Sobic006G183400--Sobic001G247300 Sobic006G183400--Sobic004G222500 Sobic003G037800 Sobic003G037800 Sobic006G183400--Sobic003G037800 Sobic006G183400--Sobic009G247900 Sobic002G359300 Sobic002G359300 Sobic006G183400--Sobic002G359300 Sobic003G264500 Sobic003G264500 Sobic006G183400--Sobic003G264500 Sobic006G075400 Sobic006G075400 Sobic003G228900--Sobic006G075400 Sobic003G228900--Sobic010G209200 Sobic009G184000 Sobic009G184000 Sobic003G228900--Sobic009G184000 Sobic003G228900--Sobic004G191400 Sobic003G432700 Sobic003G432700 Sobic003G228900--Sobic003G432700 Sobic003G260300 Sobic003G260300 Sobic003G228900--Sobic003G260300 Sobic007G017500 Sobic007G017500 Sobic003G228900--Sobic007G017500 Sobic003G228900--Sobic009G122400 Sobic003G228900--Sobic001G079300 Sobic002G189100--Sobic003G228900 Sobic002G189100--Sobic003G093000 Sobic009G192600 Sobic009G192600 Sobic002G189100--Sobic009G192600 Sobic002G189100--Sobic009G184000 Sobic003G142300 Sobic003G142300 Sobic002G189100--Sobic003G142300 Sobic002G189100--Sobic010G209200 Sobic002G189100--Sobic002G220000 Sobic002G189100--Sobic004G191400 Sobic002G189100--Sobic001G267600
Octagon: transcription factors


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