Gene annotation
Transcriptome id Sobic.001G035100.1
Synonym Sb01g003280,
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
Up-reguralion under heat (PubMedID : 24916767)
ZOS3-21 - C2H2 zinc finger protein, expressed
UniProt C5WV18
Pfam PF13912
Panther DB PTHR26374 PTHR26374:SF166
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G28200 : C2H2-type zinc finger family protein
RAP-DB (Rice) LOC_Os03g60560.1 : ZOS3-21 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a008797 , Zm00025a008801
Brachypodium KQK12444 , KQJ87106
Barley HORVU5Hr1G112900.1
Wheat TraesCS5B02G489800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G220000 expressed protein -
2 Sobic.003G093000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
3 Sobic.003G428700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.004G219800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
5 Sobic.004G169200 U-box domain-containing protein, putative, expressed -
6 Sobic.004G097100 F-box family protein, putative, expressed -
7 Sobic.004G222500 gibberellin 2-beta-dioxygenase 7, putative, expressed K04125: gibberellin 2beta-dioxygenase
8 Sobic.009G241801 - -
9 Sobic.001G471200 membrane protein, putative, expressed -
10 Sobic.002G339000 OsFBX257 - F-box domain containing protein, expressed -
11 Sobic.009G122400 expressed protein -
12 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
13 Sobic.001G330100 ZOS3-12 - C2H2 zinc finger protein, expressed -
14 Sobic.001G256700 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
15 Sobic.002G395300 gibberellin receptor GID1L2, putative, expressed -
16 Sobic.002G358300 expressed protein -
17 Sobic.002G388900 Upregulated in cold tolerant sorghum under stress(PubMedID : 26645959)@cytochrome P450 72A1, putative, expressed -
18 Sobic.004G308900 AP2 domain containing protein, expressed -
19 Sobic.008G187001 - K09422: transcription factor MYB, plant
20 Sobic.001G383700 OsCML27 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML


Gene co-expression network
sample Sobic001G035100 Sobic001G035100 Sobic002G220000 Sobic002G220000 Sobic001G035100--Sobic002G220000 Sobic003G093000 Sobic003G093000 Sobic001G035100--Sobic003G093000 Sobic003G428700 Sobic003G428700 Sobic001G035100--Sobic003G428700 Sobic004G219800 Sobic004G219800 Sobic001G035100--Sobic004G219800 Sobic004G169200 Sobic004G169200 Sobic001G035100--Sobic004G169200 Sobic004G097100 Sobic004G097100 Sobic001G035100--Sobic004G097100 Sobic004G222500 Sobic004G222500 Sobic001G035100--Sobic004G222500 Sobic009G241801 Sobic009G241801 Sobic001G035100--Sobic009G241801 Sobic001G471200 Sobic001G471200 Sobic001G035100--Sobic001G471200 Sobic002G220000--Sobic003G093000 Sobic002G220000--Sobic001G035100 Sobic001G330400 Sobic001G330400 Sobic002G220000--Sobic001G330400 Sobic002G220000--Sobic003G428700 Sobic003G092900 Sobic003G092900 Sobic002G220000--Sobic003G092900 Sobic009G122400 Sobic009G122400 Sobic002G220000--Sobic009G122400 Sobic002G220000--Sobic004G169200 Sobic002G189100 Sobic002G189100 Sobic002G220000--Sobic002G189100 Sobic002G220000--Sobic004G219800 Sobic003G093000--Sobic002G220000 Sobic003G093000--Sobic003G092900 Sobic003G093000--Sobic002G189100 Sobic003G093000--Sobic004G222500 Sobic003G093000--Sobic003G428700 Sobic004G191400 Sobic004G191400 Sobic003G093000--Sobic004G191400 Sobic003G228900 Sobic003G228900 Sobic003G093000--Sobic003G228900 Sobic003G093000--Sobic009G122400 Sobic010G259300 Sobic010G259300 Sobic003G093000--Sobic010G259300 Sobic003G428700--Sobic009G122400 Sobic010G209200 Sobic010G209200 Sobic003G428700--Sobic010G209200 Sobic003G428700--Sobic004G191400 Sobic003G428700--Sobic004G169200 Sobic003G428700--Sobic003G093000 Sobic003G428700--Sobic004G222500 Sobic009G247900 Sobic009G247900 Sobic003G428700--Sobic009G247900 Sobic003G428700--Sobic002G220000 Sobic003G428700--Sobic001G035100 Sobic001G256700 Sobic001G256700 Sobic004G219800--Sobic001G256700 Sobic001G330100 Sobic001G330100 Sobic004G219800--Sobic001G330100 Sobic004G352000 Sobic004G352000 Sobic004G219800--Sobic004G352000 Sobic004G219800--Sobic001G330400 Sobic009G032000 Sobic009G032000 Sobic004G219800--Sobic009G032000 Sobic008G187001 Sobic008G187001 Sobic004G219800--Sobic008G187001 Sobic002G388900 Sobic002G388900 Sobic004G219800--Sobic002G388900 Sobic007G017500 Sobic007G017500 Sobic004G219800--Sobic007G017500 Sobic006G075400 Sobic006G075400 Sobic004G219800--Sobic006G075400 Sobic002G395300 Sobic002G395300 Sobic004G169200--Sobic002G395300 Sobic002G358300 Sobic002G358300 Sobic004G169200--Sobic002G358300 Sobic004G169200--Sobic003G428700 Sobic006G263600 Sobic006G263600 Sobic004G169200--Sobic006G263600 Sobic004G169200--Sobic004G191400 Sobic004G169200--Sobic009G122400 Sobic004G169200--Sobic010G209200 Sobic004G169200--Sobic002G220000 Sobic002G339000 Sobic002G339000 Sobic004G169200--Sobic002G339000 Sobic003G230100 Sobic003G230100 Sobic004G097100--Sobic003G230100 Sobic004G229500 Sobic004G229500 Sobic004G097100--Sobic004G229500 Sobic004G246600 Sobic004G246600 Sobic004G097100--Sobic004G246600 Sobic006G187900 Sobic006G187900 Sobic004G097100--Sobic006G187900 Sobic004G097100--Sobic009G241801 Sobic005G013500 Sobic005G013500 Sobic004G097100--Sobic005G013500 Sobic004G097100--Sobic002G388900 Sobic004G308900 Sobic004G308900 Sobic004G097100--Sobic004G308900 Sobic002G184300 Sobic002G184300 Sobic004G097100--Sobic002G184300 Sobic002G140300 Sobic002G140300 Sobic004G222500--Sobic002G140300 Sobic004G222500--Sobic003G093000 Sobic004G222500--Sobic003G092900 Sobic004G222500--Sobic003G428700 Sobic006G183400 Sobic006G183400 Sobic004G222500--Sobic006G183400 Sobic004G222500--Sobic009G247900 Sobic004G222500--Sobic001G035100 Sobic004G222500--Sobic002G220000 Sobic006G179500 Sobic006G179500 Sobic004G222500--Sobic006G179500 Sobic009G241801--Sobic002G388900 Sobic009G241801--Sobic001G330100 Sobic009G241801--Sobic008G187001 Sobic009G241801--Sobic004G097100 Sobic009G144700 Sobic009G144700 Sobic009G241801--Sobic009G144700 Sobic009G241801--Sobic001G256700 Sobic009G241801--Sobic004G219800 Sobic009G241801--Sobic009G032000 Sobic009G241801--Sobic004G308900 Sobic004G341800 Sobic004G341800 Sobic001G471200--Sobic004G341800 Sobic001G471200--Sobic001G035100 Sobic004G228500 Sobic004G228500 Sobic001G471200--Sobic004G228500 Sobic001G471200--Sobic003G228900 Sobic006G103000 Sobic006G103000 Sobic001G471200--Sobic006G103000 Sobic001G471200--Sobic004G219800 Sobic001G471200--Sobic006G183400 Sobic010G223600 Sobic010G223600 Sobic001G471200--Sobic010G223600 Sobic004G243100 Sobic004G243100 Sobic001G471200--Sobic004G243100
Octagon: transcription factors


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