Gene annotation
Transcriptome id Sobic.004G308900.1
Synonym ABR1
Functional annotation AP2 domain containing protein, expressed
UniProt A0A194YSF1
Pfam PF00847
Panther DB PTHR31190 PTHR31190:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G16770 : ethylene-responsive element binding protein
RAP-DB (Rice) LOC_Os02g52670.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a005317 , Zm00025a000950 , Zm00025a022220 , Zm00025a037299 , Zm00025a033320 , Zm00025a052430 , Zm00025a020464 , Zm00025a035559 , Zm00025a005425 , Zm00025a023615 , Zm00025a033098 , Zm00025a024332 , Zm00025a036079 , Zm00025a000949
Brachypodium KQK23284 , KQJ98629 , KQK20425 , KQJ91651 , KQK01756
Barley HORVU2Hr1G018830.1 , HORVU2Hr1G018830.2 , HORVU7Hr1G055290.34 , HORVU7Hr1G055290.33 , HORVU7Hr1G055290.30 , HORVU7Hr1G055290.31 , HORVU4Hr1G077310.1 , HORVU4Hr1G077310.2 , HORVU4Hr1G077310.3 , HORVU4Hr1G077310.4 , HORVU4Hr1G077310.7 , HORVU4Hr1G077310.8 , HORVU4Hr1G080300.1 , HORVU4Hr1G077310.5 , HORVU6Hr1G078510.4 , HORVU6Hr1G078510.1 , HORVU6Hr1G078510.3 , HORVU6Hr1G078510.2 , HORVU1Hr1G082310.1
Wheat TraesCS2B02G127800 , TraesCS4B02G299500 , TraesCS4A02G005600 , TraesCS4B02G299400 , TraesCS7B02G162100 , TraesCS5A02G314600 , TraesCS2A02G109800 , TraesCS7D02G265000 , TraesCS7A02G264100 , TraesCS4D02G298400 , TraesCS2D02G110000 , TraesCS2D02G110000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G358300 expressed protein -
2 Sobic.007G122800 expressed protein -
3 Sobic.001G195200 cytochrome P450, putative, expressed -
4 Sobic.001G256700 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
5 Sobic.004G191400 - -
6 Sobic.009G032000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.004G246600 expressed protein -
8 Sobic.002G388900 Upregulated in cold tolerant sorghum under stress(PubMedID : 26645959)@cytochrome P450 72A1, putative, expressed -
9 Sobic.004G191300 - -
10 Sobic.009G122400 expressed protein -
11 Sobic.004G294400 expansin precursor, putative, expressed -
12 Sobic.002G395300 gibberellin receptor GID1L2, putative, expressed -
13 Sobic.008G187001 - K09422: transcription factor MYB, plant
14 Sobic.004G169200 U-box domain-containing protein, putative, expressed -
15 Sobic.004G097100 F-box family protein, putative, expressed -
16 Sobic.004G229500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed -
17 Sobic.009G241801 - -
18 Sobic.002G339000 OsFBX257 - F-box domain containing protein, expressed -
19 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
20 Sobic.002G184300 heat shock protein DnaJ, putative, expressed -


Gene co-expression network
sample Sobic004G308900 Sobic004G308900 Sobic002G358300 Sobic002G358300 Sobic004G308900--Sobic002G358300 Sobic007G122800 Sobic007G122800 Sobic004G308900--Sobic007G122800 Sobic001G195200 Sobic001G195200 Sobic004G308900--Sobic001G195200 Sobic001G256700 Sobic001G256700 Sobic004G308900--Sobic001G256700 Sobic004G191400 Sobic004G191400 Sobic004G308900--Sobic004G191400 Sobic009G032000 Sobic009G032000 Sobic004G308900--Sobic009G032000 Sobic004G246600 Sobic004G246600 Sobic004G308900--Sobic004G246600 Sobic002G388900 Sobic002G388900 Sobic004G308900--Sobic002G388900 Sobic004G191300 Sobic004G191300 Sobic004G308900--Sobic004G191300 Sobic002G358300--Sobic004G308900 Sobic002G358300--Sobic007G122800 Sobic002G358300--Sobic001G195200 Sobic002G358300--Sobic009G032000 Sobic002G358300--Sobic004G191400 Sobic004G169200 Sobic004G169200 Sobic002G358300--Sobic004G169200 Sobic002G358300--Sobic004G191300 Sobic002G395300 Sobic002G395300 Sobic002G358300--Sobic002G395300 Sobic004G294400 Sobic004G294400 Sobic002G358300--Sobic004G294400 Sobic007G122800--Sobic002G358300 Sobic007G122800--Sobic004G308900 Sobic007G122800--Sobic004G191400 Sobic007G122800--Sobic004G294400 Sobic007G122800--Sobic004G191300 Sobic007G122800--Sobic001G195200 Sobic006G007900 Sobic006G007900 Sobic007G122800--Sobic006G007900 Sobic009G122400 Sobic009G122400 Sobic007G122800--Sobic009G122400 Sobic003G268600 Sobic003G268600 Sobic007G122800--Sobic003G268600 Sobic001G195200--Sobic004G294400 Sobic001G195200--Sobic001G256700 Sobic001G195200--Sobic004G308900 Sobic001G195200--Sobic002G358300 Sobic001G195200--Sobic007G122800 Sobic004G004500 Sobic004G004500 Sobic001G195200--Sobic004G004500 Sobic004G108200 Sobic004G108200 Sobic001G195200--Sobic004G108200 Sobic001G195200--Sobic002G395300 Sobic001G195200--Sobic004G191300 Sobic008G187001 Sobic008G187001 Sobic001G256700--Sobic008G187001 Sobic001G256700--Sobic004G004500 Sobic001G256700--Sobic002G388900 Sobic001G256700--Sobic004G294400 Sobic004G219800 Sobic004G219800 Sobic001G256700--Sobic004G219800 Sobic001G256700--Sobic002G395300 Sobic002G339000 Sobic002G339000 Sobic001G256700--Sobic002G339000 Sobic001G330100 Sobic001G330100 Sobic001G256700--Sobic001G330100 Sobic001G256700--Sobic001G195200 Sobic004G191400--Sobic004G191300 Sobic001G079300 Sobic001G079300 Sobic004G191400--Sobic001G079300 Sobic004G191400--Sobic009G122400 Sobic010G209200 Sobic010G209200 Sobic004G191400--Sobic010G209200 Sobic004G191400--Sobic007G122800 Sobic003G228900 Sobic003G228900 Sobic004G191400--Sobic003G228900 Sobic004G191400--Sobic004G308900 Sobic003G428700 Sobic003G428700 Sobic004G191400--Sobic003G428700 Sobic004G191400--Sobic004G294400 Sobic009G032000--Sobic001G256700 Sobic009G032000--Sobic002G388900 Sobic009G032000--Sobic004G219800 Sobic009G032000--Sobic002G358300 Sobic009G032000--Sobic004G308900 Sobic009G032000--Sobic004G246600 Sobic009G032000--Sobic001G330100 Sobic005G013500 Sobic005G013500 Sobic009G032000--Sobic005G013500 Sobic009G032000--Sobic002G395300 Sobic004G229500 Sobic004G229500 Sobic004G246600--Sobic004G229500 Sobic004G246600--Sobic009G032000 Sobic004G246600--Sobic004G308900 Sobic004G246600--Sobic005G013500 Sobic004G246600--Sobic002G358300 Sobic004G097100 Sobic004G097100 Sobic004G246600--Sobic004G097100 Sobic001G143100 Sobic001G143100 Sobic004G246600--Sobic001G143100 Sobic002G269100 Sobic002G269100 Sobic004G246600--Sobic002G269100 Sobic002G184300 Sobic002G184300 Sobic004G246600--Sobic002G184300 Sobic002G388900--Sobic008G187001 Sobic002G388900--Sobic001G256700 Sobic009G144700 Sobic009G144700 Sobic002G388900--Sobic009G144700 Sobic002G388900--Sobic001G330100 Sobic009G241801 Sobic009G241801 Sobic002G388900--Sobic009G241801 Sobic002G388900--Sobic009G032000 Sobic004G352000 Sobic004G352000 Sobic002G388900--Sobic004G352000 Sobic002G388900--Sobic004G219800 Sobic002G388900--Sobic004G308900 Sobic004G191300--Sobic004G191400 Sobic004G191300--Sobic009G122400 Sobic004G191300--Sobic001G079300 Sobic004G191300--Sobic010G209200 Sobic004G191300--Sobic007G122800 Sobic004G191300--Sobic004G294400 Sobic004G191300--Sobic004G308900 Sobic004G191300--Sobic002G358300 Sobic004G191300--Sobic001G195200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.