Gene annotation
Transcriptome id Sobic.001G256700.1
Synonym ATCYS1, CGS1, MTO1, Sb01g023050, CGS
Functional annotation cystathionine gamma-synthase, putative, expressed
UniProt C5WMC8
Pfam PF01053
Panther DB PTHR11808 PTHR11808:SF56
NCBI CDD KOG0053; Cystathionine beta-lyases/cystathionine gamma-synthases
KEGG Orthology K01739; cystathionine gamma-synthase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G01120 : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
RAP-DB (Rice) LOC_Os10g25950.1 : cystathionine gamma-synthase, putative, expressed
MaizeGDB (Corn) Zm00025a007033
Brachypodium KQK22864
Barley HORVU4Hr1G028560.4 , HORVU4Hr1G028560.1 , HORVU2Hr1G011970.4 , HORVU2Hr1G011970.5 , HORVU2Hr1G011970.3 , HORVU2Hr1G011970.1 , HORVU4Hr1G028580.1 , HORVU4Hr1G028580.3 , HORVU4Hr1G028580.2 , HORVU4Hr1G028560.3 , HORVU4Hr1G028560.2 , HORVU2Hr1G011970.2
Wheat TraesCS1A02G349500 , TraesCS2B02G070300 , TraesCS2A02G058800 , TraesCSU02G244200 , TraesCS2B02G070600 , TraesCS2D02G058200 , TraesCS2D02G058000 , TraesCS2D02G058100 , TraesCS2B02G070100 , TraesCS2B02G070200 , TraesCS2B02G070000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G187001 - K09422: transcription factor MYB, plant
2 Sobic.004G004500 lactate/malate dehydrogenase, putative, expressed K00016: LDH, L-lactate dehydrogenase
3 Sobic.002G388900 Upregulated in cold tolerant sorghum under stress(PubMedID : 26645959)@cytochrome P450 72A1, putative, expressed -
4 Sobic.004G294400 expansin precursor, putative, expressed -
5 Sobic.004G219800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
6 Sobic.002G395300 gibberellin receptor GID1L2, putative, expressed -
7 Sobic.002G339000 OsFBX257 - F-box domain containing protein, expressed -
8 Sobic.001G330100 ZOS3-12 - C2H2 zinc finger protein, expressed -
9 Sobic.001G195200 cytochrome P450, putative, expressed -
10 Sobic.009G032000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.004G108200 cytochrome P450 93A2, putative, expressed -
12 Sobic.007G036900 triacylglycerol lipase like protein, putative, expressed -
13 Sobic.009G144700 peroxidase precursor, putative, expressed K00430: peroxidase
14 Sobic.004G352000 cytochrome P450, putative, expressed -
15 Sobic.004G308900 AP2 domain containing protein, expressed -
16 Sobic.009G122400 expressed protein -
17 Sobic.006G075400 U-box domain-containing protein, putative, expressed -
18 Sobic.001G481100 DUF581 domain containing protein, expressed -
19 Sobic.003G148300 pectinesterase, putative, expressed K01051: pectinesterase
20 Sobic.007G017500 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G256700 Sobic001G256700 Sobic008G187001 Sobic008G187001 Sobic001G256700--Sobic008G187001 Sobic004G004500 Sobic004G004500 Sobic001G256700--Sobic004G004500 Sobic002G388900 Sobic002G388900 Sobic001G256700--Sobic002G388900 Sobic004G294400 Sobic004G294400 Sobic001G256700--Sobic004G294400 Sobic004G219800 Sobic004G219800 Sobic001G256700--Sobic004G219800 Sobic002G395300 Sobic002G395300 Sobic001G256700--Sobic002G395300 Sobic002G339000 Sobic002G339000 Sobic001G256700--Sobic002G339000 Sobic001G330100 Sobic001G330100 Sobic001G256700--Sobic001G330100 Sobic001G195200 Sobic001G195200 Sobic001G256700--Sobic001G195200 Sobic008G187001--Sobic002G388900 Sobic008G187001--Sobic001G256700 Sobic007G036900 Sobic007G036900 Sobic008G187001--Sobic007G036900 Sobic009G224100 Sobic009G224100 Sobic008G187001--Sobic009G224100 Sobic008G187001--Sobic004G219800 Sobic009G032000 Sobic009G032000 Sobic008G187001--Sobic009G032000 Sobic008G187001--Sobic001G330100 Sobic009G122400 Sobic009G122400 Sobic008G187001--Sobic009G122400 Sobic004G352000 Sobic004G352000 Sobic008G187001--Sobic004G352000 Sobic004G004500--Sobic002G339000 Sobic004G004500--Sobic001G256700 Sobic004G004500--Sobic007G036900 Sobic003G148300 Sobic003G148300 Sobic004G004500--Sobic003G148300 Sobic004G108200 Sobic004G108200 Sobic004G004500--Sobic004G108200 Sobic004G004500--Sobic001G195200 Sobic009G189501 Sobic009G189501 Sobic004G004500--Sobic009G189501 Sobic004G004500--Sobic004G294400 Sobic004G229800 Sobic004G229800 Sobic004G004500--Sobic004G229800 Sobic002G388900--Sobic008G187001 Sobic002G388900--Sobic001G256700 Sobic009G144700 Sobic009G144700 Sobic002G388900--Sobic009G144700 Sobic002G388900--Sobic001G330100 Sobic009G241801 Sobic009G241801 Sobic002G388900--Sobic009G241801 Sobic002G388900--Sobic009G032000 Sobic002G388900--Sobic004G352000 Sobic002G388900--Sobic004G219800 Sobic004G308900 Sobic004G308900 Sobic002G388900--Sobic004G308900 Sobic007G017500 Sobic007G017500 Sobic004G294400--Sobic007G017500 Sobic004G294400--Sobic001G256700 Sobic006G075400 Sobic006G075400 Sobic004G294400--Sobic006G075400 Sobic004G294400--Sobic004G108200 Sobic004G294400--Sobic001G195200 Sobic007G122800 Sobic007G122800 Sobic004G294400--Sobic007G122800 Sobic003G228900 Sobic003G228900 Sobic004G294400--Sobic003G228900 Sobic004G294400--Sobic002G395300 Sobic004G191300 Sobic004G191300 Sobic004G294400--Sobic004G191300 Sobic004G219800--Sobic001G256700 Sobic004G219800--Sobic001G330100 Sobic004G219800--Sobic004G352000 Sobic001G330400 Sobic001G330400 Sobic004G219800--Sobic001G330400 Sobic004G219800--Sobic009G032000 Sobic004G219800--Sobic008G187001 Sobic004G219800--Sobic002G388900 Sobic004G219800--Sobic007G017500 Sobic004G219800--Sobic006G075400 Sobic002G395300--Sobic001G256700 Sobic002G395300--Sobic001G330100 Sobic004G169200 Sobic004G169200 Sobic002G395300--Sobic004G169200 Sobic002G395300--Sobic004G294400 Sobic002G395300--Sobic002G388900 Sobic002G395300--Sobic004G108200 Sobic002G395300--Sobic001G195200 Sobic002G395300--Sobic009G144700 Sobic002G395300--Sobic009G032000 Sobic002G339000--Sobic004G004500 Sobic002G339000--Sobic001G256700 Sobic002G339000--Sobic007G036900 Sobic002G339000--Sobic003G148300 Sobic002G339000--Sobic001G195200 Sobic002G339000--Sobic004G169200 Sobic002G339000--Sobic004G108200 Sobic002G339000--Sobic002G395300 Sobic007G214600 Sobic007G214600 Sobic002G339000--Sobic007G214600 Sobic001G330200 Sobic001G330200 Sobic001G330100--Sobic001G330200 Sobic001G330100--Sobic009G144700 Sobic001G330100--Sobic002G388900 Sobic001G330100--Sobic001G256700 Sobic001G330100--Sobic004G219800 Sobic001G330100--Sobic002G395300 Sobic001G330100--Sobic004G108200 Sobic001G330100--Sobic004G352000 Sobic001G330100--Sobic004G294400 Sobic001G195200--Sobic004G294400 Sobic001G195200--Sobic001G256700 Sobic001G195200--Sobic004G308900 Sobic002G358300 Sobic002G358300 Sobic001G195200--Sobic002G358300 Sobic001G195200--Sobic007G122800 Sobic001G195200--Sobic004G004500 Sobic001G195200--Sobic004G108200 Sobic001G195200--Sobic002G395300 Sobic001G195200--Sobic004G191300
Octagon: transcription factors


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