Gene annotation
Transcriptome id Sobic.004G004500.1
Synonym Sb04g000590
Functional annotation lactate/malate dehydrogenase, putative, expressed
UniProt C5XRJ7
Pfam PF02866 PF00056
Panther DB PTHR11540 PTHR11540:SF3
NCBI CDD KOG1495; Lactate dehydrogenase
KEGG Orthology K00016; LDH, L-lactate dehydrogenase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0016491oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT4G17260 : Lactate/malate dehydrogenase family protein
RAP-DB (Rice) LOC_Os02g01510.1 : lactate/malate dehydrogenase, putative, expressed
MaizeGDB (Corn) Zm00025a018644 , Zm00025a018645
Brachypodium KQJ95166
Barley HORVU6Hr1G015500.2 , HORVU2Hr1G012830.1 , HORVU6Hr1G015500.4 , HORVU6Hr1G015500.3 , HORVU6Hr1G015500.1
Wheat TraesCS6D02G078300 , TraesCS2D02G075200 , TraesCS6B02G029700 , TraesCS6A02G085300 , TraesCS2B02G091400 , TraesCS6B02G116700 , TraesCS6B02G116700 , TraesCS7A02G417800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G339000 OsFBX257 - F-box domain containing protein, expressed -
2 Sobic.001G256700 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
3 Sobic.007G036900 triacylglycerol lipase like protein, putative, expressed -
4 Sobic.003G148300 pectinesterase, putative, expressed K01051: pectinesterase
5 Sobic.004G108200 cytochrome P450 93A2, putative, expressed -
6 Sobic.001G195200 cytochrome P450, putative, expressed -
7 Sobic.009G189501 - -
8 Sobic.004G294400 expansin precursor, putative, expressed -
9 Sobic.004G229800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 2, putative, expressed -
10 Sobic.002G395300 gibberellin receptor GID1L2, putative, expressed -
11 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
12 Sobic.008G187001 - K09422: transcription factor MYB, plant
13 Sobic.001G108200 expressed protein -
14 Sobic.006G075400 U-box domain-containing protein, putative, expressed -
15 Sobic.007G214600 EF hand family protein, putative, expressed -
16 Sobic.003G116800 cinnamoyl CoA reductase, putative, expressed K09753: cinnamoyl-CoA reductase
17 Sobic.001G481100 DUF581 domain containing protein, expressed -
18 Sobic.004G086400 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
19 Sobic.005G099000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed -
20 Sobic.004G219800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant


Gene co-expression network
sample Sobic004G004500 Sobic004G004500 Sobic002G339000 Sobic002G339000 Sobic004G004500--Sobic002G339000 Sobic001G256700 Sobic001G256700 Sobic004G004500--Sobic001G256700 Sobic007G036900 Sobic007G036900 Sobic004G004500--Sobic007G036900 Sobic003G148300 Sobic003G148300 Sobic004G004500--Sobic003G148300 Sobic004G108200 Sobic004G108200 Sobic004G004500--Sobic004G108200 Sobic001G195200 Sobic001G195200 Sobic004G004500--Sobic001G195200 Sobic009G189501 Sobic009G189501 Sobic004G004500--Sobic009G189501 Sobic004G294400 Sobic004G294400 Sobic004G004500--Sobic004G294400 Sobic004G229800 Sobic004G229800 Sobic004G004500--Sobic004G229800 Sobic002G339000--Sobic004G004500 Sobic002G339000--Sobic001G256700 Sobic002G339000--Sobic007G036900 Sobic002G339000--Sobic003G148300 Sobic002G339000--Sobic001G195200 Sobic004G169200 Sobic004G169200 Sobic002G339000--Sobic004G169200 Sobic002G339000--Sobic004G108200 Sobic002G395300 Sobic002G395300 Sobic002G339000--Sobic002G395300 Sobic007G214600 Sobic007G214600 Sobic002G339000--Sobic007G214600 Sobic008G187001 Sobic008G187001 Sobic001G256700--Sobic008G187001 Sobic001G256700--Sobic004G004500 Sobic002G388900 Sobic002G388900 Sobic001G256700--Sobic002G388900 Sobic001G256700--Sobic004G294400 Sobic004G219800 Sobic004G219800 Sobic001G256700--Sobic004G219800 Sobic001G256700--Sobic002G395300 Sobic001G256700--Sobic002G339000 Sobic001G330100 Sobic001G330100 Sobic001G256700--Sobic001G330100 Sobic001G256700--Sobic001G195200 Sobic007G036900--Sobic004G004500 Sobic007G036900--Sobic008G187001 Sobic007G036900--Sobic004G229800 Sobic007G036900--Sobic001G256700 Sobic004G141200 Sobic004G141200 Sobic007G036900--Sobic004G141200 Sobic007G036900--Sobic002G339000 Sobic003G364600 Sobic003G364600 Sobic007G036900--Sobic003G364600 Sobic001G108200 Sobic001G108200 Sobic007G036900--Sobic001G108200 Sobic001G079300 Sobic001G079300 Sobic007G036900--Sobic001G079300 Sobic003G148300--Sobic004G108200 Sobic003G148300--Sobic004G004500 Sobic004G086400 Sobic004G086400 Sobic003G148300--Sobic004G086400 Sobic009G144700 Sobic009G144700 Sobic003G148300--Sobic009G144700 Sobic003G148300--Sobic004G294400 Sobic003G148300--Sobic001G256700 Sobic003G148300--Sobic001G330100 Sobic003G148300--Sobic002G339000 Sobic010G212800 Sobic010G212800 Sobic003G148300--Sobic010G212800 Sobic004G108200--Sobic003G148300 Sobic004G108200--Sobic009G144700 Sobic004G108200--Sobic004G294400 Sobic004G108200--Sobic001G256700 Sobic004G108200--Sobic001G330100 Sobic004G108200--Sobic004G004500 Sobic004G108200--Sobic002G395300 Sobic004G108200--Sobic001G195200 Sobic002G234400 Sobic002G234400 Sobic004G108200--Sobic002G234400 Sobic001G195200--Sobic004G294400 Sobic001G195200--Sobic001G256700 Sobic004G308900 Sobic004G308900 Sobic001G195200--Sobic004G308900 Sobic002G358300 Sobic002G358300 Sobic001G195200--Sobic002G358300 Sobic007G122800 Sobic007G122800 Sobic001G195200--Sobic007G122800 Sobic001G195200--Sobic004G004500 Sobic001G195200--Sobic004G108200 Sobic001G195200--Sobic002G395300 Sobic004G191300 Sobic004G191300 Sobic001G195200--Sobic004G191300 Sobic009G189501--Sobic004G004500 Sobic001G391500 Sobic001G391500 Sobic009G189501--Sobic001G391500 Sobic001G459800 Sobic001G459800 Sobic009G189501--Sobic001G459800 Sobic009G189501--Sobic002G339000 Sobic009G189501--Sobic007G214600 Sobic001G397300 Sobic001G397300 Sobic009G189501--Sobic001G397300 Sobic009G189501--Sobic007G036900 Sobic009G189501--Sobic004G141200 Sobic003G355100 Sobic003G355100 Sobic009G189501--Sobic003G355100 Sobic007G017500 Sobic007G017500 Sobic004G294400--Sobic007G017500 Sobic004G294400--Sobic001G256700 Sobic006G075400 Sobic006G075400 Sobic004G294400--Sobic006G075400 Sobic004G294400--Sobic004G108200 Sobic004G294400--Sobic001G195200 Sobic004G294400--Sobic007G122800 Sobic003G228900 Sobic003G228900 Sobic004G294400--Sobic003G228900 Sobic004G294400--Sobic002G395300 Sobic004G294400--Sobic004G191300 Sobic001G435000 Sobic001G435000 Sobic004G229800--Sobic001G435000 Sobic004G229800--Sobic007G036900 Sobic001G018300 Sobic001G018300 Sobic004G229800--Sobic001G018300 Sobic002G336600 Sobic002G336600 Sobic004G229800--Sobic002G336600 Sobic004G229800--Sobic004G141200 Sobic002G188900 Sobic002G188900 Sobic004G229800--Sobic002G188900 Sobic004G208700 Sobic004G208700 Sobic004G229800--Sobic004G208700 Sobic004G229800--Sobic004G004500 Sobic002G140400 Sobic002G140400 Sobic004G229800--Sobic002G140400
Octagon: transcription factors


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