Gene annotation
Transcriptome id Sobic.003G116800.1,Sobic.003G116800.2
Synonym CCR1, Sb03g009840, IRX4, ATCCR1
Functional annotation cinnamoyl CoA reductase, putative, expressed
UniProt A0A1B6Q2N6 , A0A1B6Q2V5
Pfam PF01073 PF01370
Panther DB PTHR10366 PTHR10366:SF470
NCBI CDD KOG1502; Flavonol reductase/cinnamoyl-CoA reductase
KEGG Orthology K09753; cinnamoyl-CoA reductase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006694steroid biosynthetic process GO:00038543-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT1G15950 : cinnamoyl coa reductase 1
RAP-DB (Rice) LOC_Os01g18120.1,LOC_Os01g18110.1 : cinnamoyl CoA reductase, putative, expressed
MaizeGDB (Corn) Zm00025a035333
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G099000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glycosyl hydrolase, putative, expressed -
2 Sobic.005G063100 expressed protein -
3 Sobic.003G286600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
4 Sobic.001G108200 expressed protein -
5 Sobic.001G435000 gibberellin receptor GID1L2, putative, expressed -
6 Sobic.010G176600 - -
7 Sobic.004G301000 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
8 Sobic.004G229800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytokinin-O-glucosyltransferase 2, putative, expressed -
9 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
10 Sobic.004G004500 lactate/malate dehydrogenase, putative, expressed K00016: LDH, L-lactate dehydrogenase
11 Sobic.004G208700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CHIT1 - Chitinase family protein precursor, expressed K01183: chitinase
12 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
13 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
14 Sobic.010G212800 expressed protein -
15 Sobic.003G148300 pectinesterase, putative, expressed K01051: pectinesterase
16 Sobic.001G140900 helix-loop-helix DNA-binding protein, putative, expressed -
17 Sobic.004G141200 cytochrome P450, putative, expressed K00487: trans-cinnamate 4-monooxygenase
18 Sobic.009G234100 WRKY49, expressed -
19 Sobic.006G207000 expressed protein -
20 Sobic.009G151600 AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic003G116800 Sobic003G116800 Sobic005G099000 Sobic005G099000 Sobic003G116800--Sobic005G099000 Sobic005G063100 Sobic005G063100 Sobic003G116800--Sobic005G063100 Sobic003G286600 Sobic003G286600 Sobic003G116800--Sobic003G286600 Sobic001G108200 Sobic001G108200 Sobic003G116800--Sobic001G108200 Sobic001G435000 Sobic001G435000 Sobic003G116800--Sobic001G435000 Sobic010G176600 Sobic010G176600 Sobic003G116800--Sobic010G176600 Sobic004G301000 Sobic004G301000 Sobic003G116800--Sobic004G301000 Sobic004G229800 Sobic004G229800 Sobic003G116800--Sobic004G229800 Sobic003G345100 Sobic003G345100 Sobic003G116800--Sobic003G345100 Sobic005G099000--Sobic005G063100 Sobic005G099000--Sobic003G345100 Sobic005G099000--Sobic003G116800 Sobic004G141200 Sobic004G141200 Sobic005G099000--Sobic004G141200 Sobic001G169500 Sobic001G169500 Sobic005G099000--Sobic001G169500 Sobic005G099000--Sobic001G435000 Sobic004G208700 Sobic004G208700 Sobic005G099000--Sobic004G208700 Sobic005G011300 Sobic005G011300 Sobic005G099000--Sobic005G011300 Sobic005G099000--Sobic001G108200 Sobic008G050600 Sobic008G050600 Sobic005G063100--Sobic008G050600 Sobic005G063100--Sobic003G345100 Sobic005G063100--Sobic003G286600 Sobic001G140900 Sobic001G140900 Sobic005G063100--Sobic001G140900 Sobic005G063100--Sobic005G099000 Sobic009G234100 Sobic009G234100 Sobic005G063100--Sobic009G234100 Sobic005G091500 Sobic005G091500 Sobic005G063100--Sobic005G091500 Sobic005G063100--Sobic004G208700 Sobic005G063100--Sobic001G435000 Sobic003G286600--Sobic010G176600 Sobic003G286600--Sobic008G050600 Sobic003G286600--Sobic005G063100 Sobic006G099900 Sobic006G099900 Sobic003G286600--Sobic006G099900 Sobic003G286600--Sobic004G208700 Sobic002G140400 Sobic002G140400 Sobic003G286600--Sobic002G140400 Sobic003G286600--Sobic003G345100 Sobic003G317100 Sobic003G317100 Sobic003G286600--Sobic003G317100 Sobic009G164600 Sobic009G164600 Sobic003G286600--Sobic009G164600 Sobic001G108200--Sobic004G141200 Sobic003G393900 Sobic003G393900 Sobic001G108200--Sobic003G393900 Sobic004G100700 Sobic004G100700 Sobic001G108200--Sobic004G100700 Sobic003G369100 Sobic003G369100 Sobic001G108200--Sobic003G369100 Sobic003G086600 Sobic003G086600 Sobic001G108200--Sobic003G086600 Sobic003G355100 Sobic003G355100 Sobic001G108200--Sobic003G355100 Sobic007G214600 Sobic007G214600 Sobic001G108200--Sobic007G214600 Sobic003G382800 Sobic003G382800 Sobic001G108200--Sobic003G382800 Sobic001G108200--Sobic005G099000 Sobic001G435000--Sobic004G208700 Sobic001G435000--Sobic004G229800 Sobic009G159400 Sobic009G159400 Sobic001G435000--Sobic009G159400 Sobic007G155000 Sobic007G155000 Sobic001G435000--Sobic007G155000 Sobic001G435000--Sobic003G345100 Sobic001G435000--Sobic005G063100 Sobic001G435000--Sobic005G099000 Sobic001G435000--Sobic008G050600 Sobic001G435000--Sobic001G140900 Sobic010G176600--Sobic003G286600 Sobic010G176600--Sobic005G063100 Sobic010G176600--Sobic002G140400 Sobic010G176600--Sobic008G050600 Sobic001G423800 Sobic001G423800 Sobic010G176600--Sobic001G423800 Sobic010G176600--Sobic009G234100 Sobic010G084700 Sobic010G084700 Sobic010G176600--Sobic010G084700 Sobic010G176600--Sobic003G116800 Sobic004G189400 Sobic004G189400 Sobic010G176600--Sobic004G189400 Sobic004G301000--Sobic004G100700 Sobic004G301000--Sobic001G108200 Sobic001G481100 Sobic001G481100 Sobic004G301000--Sobic001G481100 Sobic004G301000--Sobic001G423800 Sobic002G188900 Sobic002G188900 Sobic004G301000--Sobic002G188900 Sobic004G301000--Sobic004G141200 Sobic004G301000--Sobic005G011300 Sobic004G301000--Sobic005G099000 Sobic002G251000 Sobic002G251000 Sobic004G301000--Sobic002G251000 Sobic004G229800--Sobic001G435000 Sobic007G036900 Sobic007G036900 Sobic004G229800--Sobic007G036900 Sobic001G018300 Sobic001G018300 Sobic004G229800--Sobic001G018300 Sobic002G336600 Sobic002G336600 Sobic004G229800--Sobic002G336600 Sobic004G229800--Sobic004G141200 Sobic004G229800--Sobic002G188900 Sobic004G229800--Sobic004G208700 Sobic004G004500 Sobic004G004500 Sobic004G229800--Sobic004G004500 Sobic004G229800--Sobic002G140400 Sobic003G345100--Sobic008G050600 Sobic003G345100--Sobic005G063100 Sobic003G345100--Sobic009G164600 Sobic003G345100--Sobic001G140900 Sobic003G345100--Sobic004G208700 Sobic003G345100--Sobic005G099000 Sobic003G345100--Sobic009G159400 Sobic003G345100--Sobic003G369100 Sobic003G345100--Sobic001G435000
Octagon: transcription factors


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