Gene annotation
Transcriptome id Sobic.003G148300.1
Synonym ATPMEPCRB, Sb03g012820
Functional annotation pectinesterase, putative, expressed
UniProt C5XIT5
Pfam PF04043 PF01095
Panther DB PTHR31707 PTHR31707:SF12
NCBI CDD -
KEGG Orthology K01051; pectinesterase
Gene Ontology GO:0004857; enzyme inhibitor activity GO:0005618cell wall


Orthologs (automatic annotation)
TAIR AT4G02330 : Plant invertase/pectin methylesterase inhibitor superfamily
RAP-DB (Rice) LOC_Os01g20980.1 : pectinesterase, putative, expressed
MaizeGDB (Corn) Zm00025a024329 , Zm00025a036965
Brachypodium KQK06705 , KQJ98516 , KQK04129
Barley HORVU2Hr1G018710.4 , HORVU2Hr1G018710.1 , HORVU2Hr1G018710.3 , HORVU1Hr1G063710.1 , HORVU1Hr1G063710.2 , HORVU1Hr1G063710.3 , HORVU1Hr1G063710.4 , HORVU1Hr1G059010.3 , HORVU1Hr1G059010.1
Wheat TraesCS1D02G230800 , TraesCS1D02G264000 , TraesCS1B02G243000 , TraesCS1A02G263900 , TraesCS1A02G231500 , TraesCS1B02G274500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G108200 cytochrome P450 93A2, putative, expressed -
2 Sobic.004G004500 lactate/malate dehydrogenase, putative, expressed K00016: LDH, L-lactate dehydrogenase
3 Sobic.004G086400 cytochrome P450 72A1, putative, expressed K15639: CYP734A1, PHYB activation tagged suppressor 1
4 Sobic.009G144700 peroxidase precursor, putative, expressed K00430: peroxidase
5 Sobic.004G294400 expansin precursor, putative, expressed -
6 Sobic.001G256700 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
7 Sobic.001G330100 ZOS3-12 - C2H2 zinc finger protein, expressed -
8 Sobic.002G339000 OsFBX257 - F-box domain containing protein, expressed -
9 Sobic.010G212800 expressed protein -
10 Sobic.002G395300 gibberellin receptor GID1L2, putative, expressed -
11 Sobic.004G352000 cytochrome P450, putative, expressed -
12 Sobic.003G116800 cinnamoyl CoA reductase, putative, expressed K09753: cinnamoyl-CoA reductase
13 Sobic.001G195200 cytochrome P450, putative, expressed -
14 Sobic.002G234400 white-brown complex homolog protein 11, putative, expressed -
15 Sobic.005G013500 WRKY52, expressed -
16 Sobic.001G330200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ZOS3-12 - C2H2 zinc finger protein, expressed -
17 Sobic.004G219800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.007G006300 expressed protein -
19 Sobic.009G032000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.006G207000 expressed protein -


Gene co-expression network
sample Sobic003G148300 Sobic003G148300 Sobic004G108200 Sobic004G108200 Sobic003G148300--Sobic004G108200 Sobic004G004500 Sobic004G004500 Sobic003G148300--Sobic004G004500 Sobic004G086400 Sobic004G086400 Sobic003G148300--Sobic004G086400 Sobic009G144700 Sobic009G144700 Sobic003G148300--Sobic009G144700 Sobic004G294400 Sobic004G294400 Sobic003G148300--Sobic004G294400 Sobic001G256700 Sobic001G256700 Sobic003G148300--Sobic001G256700 Sobic001G330100 Sobic001G330100 Sobic003G148300--Sobic001G330100 Sobic002G339000 Sobic002G339000 Sobic003G148300--Sobic002G339000 Sobic010G212800 Sobic010G212800 Sobic003G148300--Sobic010G212800 Sobic004G108200--Sobic003G148300 Sobic004G108200--Sobic009G144700 Sobic004G108200--Sobic004G294400 Sobic004G108200--Sobic001G256700 Sobic004G108200--Sobic001G330100 Sobic004G108200--Sobic004G004500 Sobic002G395300 Sobic002G395300 Sobic004G108200--Sobic002G395300 Sobic001G195200 Sobic001G195200 Sobic004G108200--Sobic001G195200 Sobic002G234400 Sobic002G234400 Sobic004G108200--Sobic002G234400 Sobic004G004500--Sobic002G339000 Sobic004G004500--Sobic001G256700 Sobic007G036900 Sobic007G036900 Sobic004G004500--Sobic007G036900 Sobic004G004500--Sobic003G148300 Sobic004G004500--Sobic004G108200 Sobic004G004500--Sobic001G195200 Sobic009G189501 Sobic009G189501 Sobic004G004500--Sobic009G189501 Sobic004G004500--Sobic004G294400 Sobic004G229800 Sobic004G229800 Sobic004G004500--Sobic004G229800 Sobic004G086400--Sobic003G148300 Sobic004G086400--Sobic004G108200 Sobic004G086400--Sobic004G004500 Sobic004G086400--Sobic010G212800 Sobic006G207000 Sobic006G207000 Sobic004G086400--Sobic006G207000 Sobic007G006300 Sobic007G006300 Sobic004G086400--Sobic007G006300 Sobic004G086400--Sobic002G234400 Sobic004G086400--Sobic002G339000 Sobic004G086400--Sobic009G189501 Sobic009G144700--Sobic004G108200 Sobic009G144700--Sobic001G330100 Sobic002G388900 Sobic002G388900 Sobic009G144700--Sobic002G388900 Sobic004G352000 Sobic004G352000 Sobic009G144700--Sobic004G352000 Sobic009G144700--Sobic001G256700 Sobic001G330200 Sobic001G330200 Sobic009G144700--Sobic001G330200 Sobic009G144700--Sobic003G148300 Sobic009G144700--Sobic004G294400 Sobic009G144700--Sobic002G395300 Sobic007G017500 Sobic007G017500 Sobic004G294400--Sobic007G017500 Sobic004G294400--Sobic001G256700 Sobic006G075400 Sobic006G075400 Sobic004G294400--Sobic006G075400 Sobic004G294400--Sobic004G108200 Sobic004G294400--Sobic001G195200 Sobic007G122800 Sobic007G122800 Sobic004G294400--Sobic007G122800 Sobic003G228900 Sobic003G228900 Sobic004G294400--Sobic003G228900 Sobic004G294400--Sobic002G395300 Sobic004G191300 Sobic004G191300 Sobic004G294400--Sobic004G191300 Sobic008G187001 Sobic008G187001 Sobic001G256700--Sobic008G187001 Sobic001G256700--Sobic004G004500 Sobic001G256700--Sobic002G388900 Sobic001G256700--Sobic004G294400 Sobic004G219800 Sobic004G219800 Sobic001G256700--Sobic004G219800 Sobic001G256700--Sobic002G395300 Sobic001G256700--Sobic002G339000 Sobic001G256700--Sobic001G330100 Sobic001G256700--Sobic001G195200 Sobic001G330100--Sobic001G330200 Sobic001G330100--Sobic009G144700 Sobic001G330100--Sobic002G388900 Sobic001G330100--Sobic001G256700 Sobic001G330100--Sobic004G219800 Sobic001G330100--Sobic002G395300 Sobic001G330100--Sobic004G108200 Sobic001G330100--Sobic004G352000 Sobic001G330100--Sobic004G294400 Sobic002G339000--Sobic004G004500 Sobic002G339000--Sobic001G256700 Sobic002G339000--Sobic007G036900 Sobic002G339000--Sobic003G148300 Sobic002G339000--Sobic001G195200 Sobic004G169200 Sobic004G169200 Sobic002G339000--Sobic004G169200 Sobic002G339000--Sobic004G108200 Sobic002G339000--Sobic002G395300 Sobic007G214600 Sobic007G214600 Sobic002G339000--Sobic007G214600 Sobic010G212800--Sobic003G148300 Sobic003G116800 Sobic003G116800 Sobic010G212800--Sobic003G116800 Sobic010G212800--Sobic004G086400 Sobic010G212800--Sobic004G108200 Sobic010G184800 Sobic010G184800 Sobic010G212800--Sobic010G184800 Sobic010G212800--Sobic004G004500 Sobic008G186100 Sobic008G186100 Sobic010G212800--Sobic008G186100 Sobic005G099000 Sobic005G099000 Sobic010G212800--Sobic005G099000 Sobic010G212800--Sobic002G339000
Octagon: transcription factors


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