Gene annotation
Transcriptome id Sobic.004G294400.1
Synonym EXPB4, Sb04g032830, ATEXPB4, ATHEXPBETA1.1
Functional annotation expansin precursor, putative, expressed
UniProt C5XRX2
Pfam PF03330 PF01357
Panther DB PTHR31692 PTHR31692:SF8
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G45110 : expansin B4
RAP-DB (Rice) LOC_Os02g44108.1 : expansin precursor, putative, expressed
MaizeGDB (Corn) Zm00025a020996 , Zm00025a020872 , Zm00025a020873
Brachypodium KQK00630 , KQK00631 , KQK00497
Barley HORVU0Hr1G018320.2 , HORVU0Hr1G018320.3 , HORVU0Hr1G018320.1 , HORVU0Hr1G018320.6 , HORVU0Hr1G018320.7 , HORVU0Hr1G018320.4 , HORVU0Hr1G018320.5 , HORVU0Hr1G018320.8 , HORVU6Hr1G063180.1 , HORVU0Hr1G016410.1
Wheat TraesCS6A02G249200 , TraesCS6B02G275700 , TraesCS6D02G231300 , TraesCS6D02G231200 , TraesCS6B02G275800 , TraesCS6A02G249300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G017500 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed -
2 Sobic.001G256700 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
3 Sobic.006G075400 U-box domain-containing protein, putative, expressed -
4 Sobic.004G108200 cytochrome P450 93A2, putative, expressed -
5 Sobic.001G195200 cytochrome P450, putative, expressed -
6 Sobic.007G122800 expressed protein -
7 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
8 Sobic.002G395300 gibberellin receptor GID1L2, putative, expressed -
9 Sobic.004G191300 - -
10 Sobic.004G191400 - -
11 Sobic.009G144700 peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.001G330100 ZOS3-12 - C2H2 zinc finger protein, expressed -
13 Sobic.001G330400 ZOS3-11 - C2H2 zinc finger protein, expressed -
14 Sobic.009G122400 expressed protein -
15 Sobic.003G148300 pectinesterase, putative, expressed K01051: pectinesterase
16 Sobic.004G004500 lactate/malate dehydrogenase, putative, expressed K00016: LDH, L-lactate dehydrogenase
17 Sobic.001G481100 DUF581 domain containing protein, expressed -
18 Sobic.009G032000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.004G219800 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
20 Sobic.002G358300 expressed protein -


Gene co-expression network
sample Sobic004G294400 Sobic004G294400 Sobic007G017500 Sobic007G017500 Sobic004G294400--Sobic007G017500 Sobic001G256700 Sobic001G256700 Sobic004G294400--Sobic001G256700 Sobic006G075400 Sobic006G075400 Sobic004G294400--Sobic006G075400 Sobic004G108200 Sobic004G108200 Sobic004G294400--Sobic004G108200 Sobic001G195200 Sobic001G195200 Sobic004G294400--Sobic001G195200 Sobic007G122800 Sobic007G122800 Sobic004G294400--Sobic007G122800 Sobic003G228900 Sobic003G228900 Sobic004G294400--Sobic003G228900 Sobic002G395300 Sobic002G395300 Sobic004G294400--Sobic002G395300 Sobic004G191300 Sobic004G191300 Sobic004G294400--Sobic004G191300 Sobic007G017500--Sobic006G075400 Sobic007G017500--Sobic004G294400 Sobic007G017500--Sobic003G228900 Sobic003G268600 Sobic003G268600 Sobic007G017500--Sobic003G268600 Sobic004G141100 Sobic004G141100 Sobic007G017500--Sobic004G141100 Sobic001G330400 Sobic001G330400 Sobic007G017500--Sobic001G330400 Sobic004G219800 Sobic004G219800 Sobic007G017500--Sobic004G219800 Sobic004G041900 Sobic004G041900 Sobic007G017500--Sobic004G041900 Sobic003G043600 Sobic003G043600 Sobic007G017500--Sobic003G043600 Sobic008G187001 Sobic008G187001 Sobic001G256700--Sobic008G187001 Sobic004G004500 Sobic004G004500 Sobic001G256700--Sobic004G004500 Sobic002G388900 Sobic002G388900 Sobic001G256700--Sobic002G388900 Sobic001G256700--Sobic004G294400 Sobic001G256700--Sobic004G219800 Sobic001G256700--Sobic002G395300 Sobic002G339000 Sobic002G339000 Sobic001G256700--Sobic002G339000 Sobic001G330100 Sobic001G330100 Sobic001G256700--Sobic001G330100 Sobic001G256700--Sobic001G195200 Sobic006G075400--Sobic007G017500 Sobic006G075400--Sobic004G294400 Sobic006G075400--Sobic003G228900 Sobic006G075400--Sobic003G043600 Sobic006G075400--Sobic003G268600 Sobic006G075400--Sobic001G330400 Sobic003G432700 Sobic003G432700 Sobic006G075400--Sobic003G432700 Sobic005G107900 Sobic005G107900 Sobic006G075400--Sobic005G107900 Sobic001G502400 Sobic001G502400 Sobic006G075400--Sobic001G502400 Sobic003G148300 Sobic003G148300 Sobic004G108200--Sobic003G148300 Sobic009G144700 Sobic009G144700 Sobic004G108200--Sobic009G144700 Sobic004G108200--Sobic004G294400 Sobic004G108200--Sobic001G256700 Sobic004G108200--Sobic001G330100 Sobic004G108200--Sobic004G004500 Sobic004G108200--Sobic002G395300 Sobic004G108200--Sobic001G195200 Sobic002G234400 Sobic002G234400 Sobic004G108200--Sobic002G234400 Sobic001G195200--Sobic004G294400 Sobic001G195200--Sobic001G256700 Sobic004G308900 Sobic004G308900 Sobic001G195200--Sobic004G308900 Sobic002G358300 Sobic002G358300 Sobic001G195200--Sobic002G358300 Sobic001G195200--Sobic007G122800 Sobic001G195200--Sobic004G004500 Sobic001G195200--Sobic004G108200 Sobic001G195200--Sobic002G395300 Sobic001G195200--Sobic004G191300 Sobic007G122800--Sobic002G358300 Sobic007G122800--Sobic004G308900 Sobic004G191400 Sobic004G191400 Sobic007G122800--Sobic004G191400 Sobic007G122800--Sobic004G294400 Sobic007G122800--Sobic004G191300 Sobic007G122800--Sobic001G195200 Sobic006G007900 Sobic006G007900 Sobic007G122800--Sobic006G007900 Sobic009G122400 Sobic009G122400 Sobic007G122800--Sobic009G122400 Sobic007G122800--Sobic003G268600 Sobic003G228900--Sobic006G075400 Sobic010G209200 Sobic010G209200 Sobic003G228900--Sobic010G209200 Sobic009G184000 Sobic009G184000 Sobic003G228900--Sobic009G184000 Sobic003G228900--Sobic004G191400 Sobic003G228900--Sobic003G432700 Sobic003G260300 Sobic003G260300 Sobic003G228900--Sobic003G260300 Sobic003G228900--Sobic007G017500 Sobic003G228900--Sobic009G122400 Sobic001G079300 Sobic001G079300 Sobic003G228900--Sobic001G079300 Sobic002G395300--Sobic001G256700 Sobic002G395300--Sobic001G330100 Sobic004G169200 Sobic004G169200 Sobic002G395300--Sobic004G169200 Sobic002G395300--Sobic004G294400 Sobic002G395300--Sobic002G388900 Sobic002G395300--Sobic004G108200 Sobic002G395300--Sobic001G195200 Sobic002G395300--Sobic009G144700 Sobic009G032000 Sobic009G032000 Sobic002G395300--Sobic009G032000 Sobic004G191300--Sobic004G191400 Sobic004G191300--Sobic009G122400 Sobic004G191300--Sobic001G079300 Sobic004G191300--Sobic010G209200 Sobic004G191300--Sobic007G122800 Sobic004G191300--Sobic004G294400 Sobic004G191300--Sobic004G308900 Sobic004G191300--Sobic002G358300 Sobic004G191300--Sobic001G195200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.