Gene annotation
Transcriptome id Sobic.007G122800.1
Synonym Sb07g019990
Functional annotation expressed protein
UniProt C5YKS3
Pfam PF05553
Panther DB PTHR33098 PTHR33098:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os08g31090.1 : expressed protein
MaizeGDB (Corn) Zm00025a006056
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G358300 expressed protein -
2 Sobic.004G308900 AP2 domain containing protein, expressed -
3 Sobic.004G191400 - -
4 Sobic.004G294400 expansin precursor, putative, expressed -
5 Sobic.004G191300 - -
6 Sobic.001G195200 cytochrome P450, putative, expressed -
7 Sobic.006G007900 SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed -
8 Sobic.009G122400 expressed protein -
9 Sobic.003G268600 - -
10 Sobic.009G032000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
11 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
12 Sobic.001G330400 ZOS3-11 - C2H2 zinc finger protein, expressed -
13 Sobic.004G064500 class I glutamine amidotransferase, putative, expressed -
14 Sobic.001G256700 cystathionine gamma-synthase, putative, expressed K01739: cystathionine gamma-synthase
15 Sobic.003G260300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
16 Sobic.007G017500 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed -
17 Sobic.006G075400 U-box domain-containing protein, putative, expressed -
18 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
19 Sobic.002G189100 beta-glucan-binding protein 4, putative, expressed K01180: endo-1,3(4)-beta-glucanase
20 Sobic.003G442100 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@dehydration-responsive element-binding protein, putative, expressed -


Gene co-expression network
sample Sobic007G122800 Sobic007G122800 Sobic002G358300 Sobic002G358300 Sobic007G122800--Sobic002G358300 Sobic004G308900 Sobic004G308900 Sobic007G122800--Sobic004G308900 Sobic004G191400 Sobic004G191400 Sobic007G122800--Sobic004G191400 Sobic004G294400 Sobic004G294400 Sobic007G122800--Sobic004G294400 Sobic004G191300 Sobic004G191300 Sobic007G122800--Sobic004G191300 Sobic001G195200 Sobic001G195200 Sobic007G122800--Sobic001G195200 Sobic006G007900 Sobic006G007900 Sobic007G122800--Sobic006G007900 Sobic009G122400 Sobic009G122400 Sobic007G122800--Sobic009G122400 Sobic003G268600 Sobic003G268600 Sobic007G122800--Sobic003G268600 Sobic002G358300--Sobic004G308900 Sobic002G358300--Sobic007G122800 Sobic002G358300--Sobic001G195200 Sobic009G032000 Sobic009G032000 Sobic002G358300--Sobic009G032000 Sobic002G358300--Sobic004G191400 Sobic004G169200 Sobic004G169200 Sobic002G358300--Sobic004G169200 Sobic002G358300--Sobic004G191300 Sobic002G395300 Sobic002G395300 Sobic002G358300--Sobic002G395300 Sobic002G358300--Sobic004G294400 Sobic004G308900--Sobic002G358300 Sobic004G308900--Sobic007G122800 Sobic004G308900--Sobic001G195200 Sobic001G256700 Sobic001G256700 Sobic004G308900--Sobic001G256700 Sobic004G308900--Sobic004G191400 Sobic004G308900--Sobic009G032000 Sobic004G246600 Sobic004G246600 Sobic004G308900--Sobic004G246600 Sobic002G388900 Sobic002G388900 Sobic004G308900--Sobic002G388900 Sobic004G308900--Sobic004G191300 Sobic004G191400--Sobic004G191300 Sobic001G079300 Sobic001G079300 Sobic004G191400--Sobic001G079300 Sobic004G191400--Sobic009G122400 Sobic010G209200 Sobic010G209200 Sobic004G191400--Sobic010G209200 Sobic004G191400--Sobic007G122800 Sobic003G228900 Sobic003G228900 Sobic004G191400--Sobic003G228900 Sobic004G191400--Sobic004G308900 Sobic003G428700 Sobic003G428700 Sobic004G191400--Sobic003G428700 Sobic004G191400--Sobic004G294400 Sobic007G017500 Sobic007G017500 Sobic004G294400--Sobic007G017500 Sobic004G294400--Sobic001G256700 Sobic006G075400 Sobic006G075400 Sobic004G294400--Sobic006G075400 Sobic004G108200 Sobic004G108200 Sobic004G294400--Sobic004G108200 Sobic004G294400--Sobic001G195200 Sobic004G294400--Sobic007G122800 Sobic004G294400--Sobic003G228900 Sobic004G294400--Sobic002G395300 Sobic004G294400--Sobic004G191300 Sobic004G191300--Sobic004G191400 Sobic004G191300--Sobic009G122400 Sobic004G191300--Sobic001G079300 Sobic004G191300--Sobic010G209200 Sobic004G191300--Sobic007G122800 Sobic004G191300--Sobic004G294400 Sobic004G191300--Sobic004G308900 Sobic004G191300--Sobic002G358300 Sobic004G191300--Sobic001G195200 Sobic001G195200--Sobic004G294400 Sobic001G195200--Sobic001G256700 Sobic001G195200--Sobic004G308900 Sobic001G195200--Sobic002G358300 Sobic001G195200--Sobic007G122800 Sobic004G004500 Sobic004G004500 Sobic001G195200--Sobic004G004500 Sobic001G195200--Sobic004G108200 Sobic001G195200--Sobic002G395300 Sobic001G195200--Sobic004G191300 Sobic006G235100 Sobic006G235100 Sobic006G007900--Sobic006G235100 Sobic001G259400 Sobic001G259400 Sobic006G007900--Sobic001G259400 Sobic003G442100 Sobic003G442100 Sobic006G007900--Sobic003G442100 Sobic009G184000 Sobic009G184000 Sobic006G007900--Sobic009G184000 Sobic006G007900--Sobic007G122800 Sobic001G259900 Sobic001G259900 Sobic006G007900--Sobic001G259900 Sobic008G066401 Sobic008G066401 Sobic006G007900--Sobic008G066401 Sobic001G502400 Sobic001G502400 Sobic006G007900--Sobic001G502400 Sobic005G086600 Sobic005G086600 Sobic006G007900--Sobic005G086600 Sobic009G122400--Sobic004G191400 Sobic009G122400--Sobic010G209200 Sobic009G122400--Sobic004G191300 Sobic009G122400--Sobic003G428700 Sobic009G122400--Sobic003G228900 Sobic009G122400--Sobic001G079300 Sobic001G330400 Sobic001G330400 Sobic009G122400--Sobic001G330400 Sobic009G122400--Sobic001G256700 Sobic009G122400--Sobic002G388900 Sobic003G268600--Sobic003G442100 Sobic003G268600--Sobic001G330400 Sobic003G043600 Sobic003G043600 Sobic003G268600--Sobic003G043600 Sobic003G268600--Sobic006G075400 Sobic003G268600--Sobic005G086600 Sobic003G268600--Sobic007G017500 Sobic003G268600--Sobic008G066401 Sobic003G064200 Sobic003G064200 Sobic003G268600--Sobic003G064200 Sobic009G145500 Sobic009G145500 Sobic003G268600--Sobic009G145500
Octagon: transcription factors


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