Gene annotation
Transcriptome id Sobic.003G442100.1
Synonym SbERF42, DREB1D, CBF4, dehydration response element binding (DREB) transcription factor, Sb03g047170, (SbDREB1);ethylene response factor 42
Functional annotation "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. " (PubMedID : 24086146)
Not investigated (PubMedID : 23766026)
dehydration-responsive element-binding protein, putative, expressed
UniProt C5XJC4
Pfam PF00847
Panther DB PTHR31839
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT5G51990 : C-repeat-binding factor 4
RAP-DB (Rice) LOC_Os01g73770.1 : dehydration-responsive element-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a014384 , Zm00025a047706 , Zm00025a033640 , Zm00025a025847 , Zm00025a056875
Brachypodium KQK00606 , KQJ91104 , KQJ91109 , PNT64988 , KQJ91103
Barley HORVU5Hr1G041600.1 , HORVU5Hr1G080420.1 , HORVU5Hr1G080340.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G268600 - -
2 Sobic.001G310600 expressed protein -
3 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -
4 Sobic.006G235100 expressed protein -
5 Sobic.001G259900 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
6 Sobic.006G007900 SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed -
7 Sobic.004G191400 - -
8 Sobic.006G075400 U-box domain-containing protein, putative, expressed -
9 Sobic.005G086600 O-methyltransferase, putative, expressed -
10 Sobic.003G064200 MYB family transcription factor, putative, expressed -
11 Sobic.001G502400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed -
12 Sobic.007G017500 FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed -
13 Sobic.001G079300 helix-loop-helix DNA-binding domain containing protein, expressed -
14 Sobic.009G184000 ICE-like protease p20 domain containing protein, putative, expressed -
15 Sobic.007G122800 expressed protein -
16 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
17 Sobic.009G145700 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.001G318700 glutathione S-transferase GSTU6, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.007G169700 inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed K01240: uridine nucleosidase
20 Sobic.008G066401 - -


Gene co-expression network
sample Sobic003G442100 Sobic003G442100 Sobic003G268600 Sobic003G268600 Sobic003G442100--Sobic003G268600 Sobic001G310600 Sobic001G310600 Sobic003G442100--Sobic001G310600 Sobic003G043600 Sobic003G043600 Sobic003G442100--Sobic003G043600 Sobic006G235100 Sobic006G235100 Sobic003G442100--Sobic006G235100 Sobic001G259900 Sobic001G259900 Sobic003G442100--Sobic001G259900 Sobic006G007900 Sobic006G007900 Sobic003G442100--Sobic006G007900 Sobic004G191400 Sobic004G191400 Sobic003G442100--Sobic004G191400 Sobic006G075400 Sobic006G075400 Sobic003G442100--Sobic006G075400 Sobic005G086600 Sobic005G086600 Sobic003G442100--Sobic005G086600 Sobic003G268600--Sobic003G442100 Sobic001G330400 Sobic001G330400 Sobic003G268600--Sobic001G330400 Sobic003G268600--Sobic003G043600 Sobic003G268600--Sobic006G075400 Sobic003G268600--Sobic005G086600 Sobic007G017500 Sobic007G017500 Sobic003G268600--Sobic007G017500 Sobic008G066401 Sobic008G066401 Sobic003G268600--Sobic008G066401 Sobic003G064200 Sobic003G064200 Sobic003G268600--Sobic003G064200 Sobic009G145500 Sobic009G145500 Sobic003G268600--Sobic009G145500 Sobic001G310600--Sobic003G442100 Sobic001G310600--Sobic003G043600 Sobic001G112200 Sobic001G112200 Sobic001G310600--Sobic001G112200 Sobic001G310600--Sobic006G075400 Sobic001G502400 Sobic001G502400 Sobic001G310600--Sobic001G502400 Sobic001G318700 Sobic001G318700 Sobic001G310600--Sobic001G318700 Sobic002G336600 Sobic002G336600 Sobic001G310600--Sobic002G336600 Sobic009G184000 Sobic009G184000 Sobic001G310600--Sobic009G184000 Sobic001G079300 Sobic001G079300 Sobic001G310600--Sobic001G079300 Sobic002G338500 Sobic002G338500 Sobic003G043600--Sobic002G338500 Sobic003G043600--Sobic009G145500 Sobic003G043600--Sobic003G268600 Sobic003G043600--Sobic006G075400 Sobic003G043600--Sobic003G442100 Sobic003G043600--Sobic001G310600 Sobic003G043600--Sobic009G184000 Sobic009G145700 Sobic009G145700 Sobic003G043600--Sobic009G145700 Sobic003G043600--Sobic001G318700 Sobic006G235100--Sobic001G502400 Sobic006G235100--Sobic006G007900 Sobic001G313600 Sobic001G313600 Sobic006G235100--Sobic001G313600 Sobic006G235100--Sobic009G184000 Sobic005G107900 Sobic005G107900 Sobic006G235100--Sobic005G107900 Sobic006G235100--Sobic003G442100 Sobic004G141100 Sobic004G141100 Sobic006G235100--Sobic004G141100 Sobic006G235100--Sobic006G075400 Sobic003G432700 Sobic003G432700 Sobic006G235100--Sobic003G432700 Sobic001G259900--Sobic003G442100 Sobic001G259900--Sobic006G007900 Sobic009G198600 Sobic009G198600 Sobic001G259900--Sobic009G198600 Sobic009G141500 Sobic009G141500 Sobic001G259900--Sobic009G141500 Sobic001G259900--Sobic009G184000 Sobic001G259900--Sobic006G235100 Sobic001G259900--Sobic004G191400 Sobic001G259900--Sobic001G310600 Sobic001G259900--Sobic001G079300 Sobic006G007900--Sobic006G235100 Sobic001G259400 Sobic001G259400 Sobic006G007900--Sobic001G259400 Sobic006G007900--Sobic003G442100 Sobic006G007900--Sobic009G184000 Sobic007G122800 Sobic007G122800 Sobic006G007900--Sobic007G122800 Sobic006G007900--Sobic001G259900 Sobic006G007900--Sobic008G066401 Sobic006G007900--Sobic001G502400 Sobic006G007900--Sobic005G086600 Sobic004G191300 Sobic004G191300 Sobic004G191400--Sobic004G191300 Sobic004G191400--Sobic001G079300 Sobic009G122400 Sobic009G122400 Sobic004G191400--Sobic009G122400 Sobic010G209200 Sobic010G209200 Sobic004G191400--Sobic010G209200 Sobic004G191400--Sobic007G122800 Sobic003G228900 Sobic003G228900 Sobic004G191400--Sobic003G228900 Sobic004G308900 Sobic004G308900 Sobic004G191400--Sobic004G308900 Sobic003G428700 Sobic003G428700 Sobic004G191400--Sobic003G428700 Sobic004G294400 Sobic004G294400 Sobic004G191400--Sobic004G294400 Sobic006G075400--Sobic007G017500 Sobic006G075400--Sobic004G294400 Sobic006G075400--Sobic003G228900 Sobic006G075400--Sobic003G043600 Sobic006G075400--Sobic003G268600 Sobic006G075400--Sobic001G330400 Sobic006G075400--Sobic003G432700 Sobic006G075400--Sobic005G107900 Sobic006G075400--Sobic001G502400 Sobic006G008000 Sobic006G008000 Sobic005G086600--Sobic006G008000 Sobic005G086600--Sobic003G268600 Sobic003G073380 Sobic003G073380 Sobic005G086600--Sobic003G073380 Sobic003G079200 Sobic003G079200 Sobic005G086600--Sobic003G079200 Sobic005G086600--Sobic006G235100 Sobic005G086600--Sobic006G007900 Sobic005G086600--Sobic003G442100 Sobic004G161751 Sobic004G161751 Sobic005G086600--Sobic004G161751 Sobic005G086600--Sobic001G259400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.